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Cluster: HRGMv2_1591_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1591_9 HRGMv2_1591_9_23 23357 23800 + 4.A.6.1.16
pfam HRGMv2_1591_9 HRGMv2_1591_9_24 23800 24081 + YajC
TC HRGMv2_1591_9 HRGMv2_1591_9_25 24118 24600 + 4.A.6.1.4
TC HRGMv2_1591_9 HRGMv2_1591_9_26 24691 25491 + 4.A.6.1.4
TC HRGMv2_1591_9 HRGMv2_1591_9_27 25481 26563 + 4.A.6.1.4
TF HRGMv2_1591_9 HRGMv2_1591_9_28 26749 27480 + GntR
STP HRGMv2_1591_9 HRGMv2_1591_9_29 27595 28761 + SIS | SIS
CAZyme HRGMv2_1591_9 HRGMv2_1591_9_30 28879 30048 + CE9
Gene ID: HRGMv2_1591_9_23
Type: TC
Location: 23357 - 23800 (+)
Gene ID: HRGMv2_1591_9_24
Type: pfam
Location: 23800 - 24081 (+)
Gene ID: HRGMv2_1591_9_25
Type: TC
Location: 24118 - 24600 (+)
Gene ID: HRGMv2_1591_9_26
Type: TC
Location: 24691 - 25491 (+)
Gene ID: HRGMv2_1591_9_27
Type: TC
Location: 25481 - 26563 (+)
Gene ID: HRGMv2_1591_9_28
Type: TF
Location: 26749 - 27480 (+)
Gene ID: HRGMv2_1591_9_29
Type: STP
Location: 27595 - 28761 (+)
Gene ID: HRGMv2_1591_9_30
Type: CAZyme
Location: 28879 - 30048 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1591_9_24 vegan > omnivore 1.05913 0.00863

🧭 Explore Read Mapping of CGC

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