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Cluster: HRGMv2_1590_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1590_2 HRGMv2_1590_2_21 19552 20034 + 4.A.6.1.5
sulfatase HRGMv2_1590_2 HRGMv2_1590_2_22 20361 21413 - S1_4
TF HRGMv2_1590_2 HRGMv2_1590_2_23 21620 22384 + HTH_DeoR
CAZyme HRGMv2_1590_2 HRGMv2_1590_2_24 22581 24002 - GH1
TC HRGMv2_1590_2 HRGMv2_1590_2_25 24078 25856 - 4.A.3.1.1
TF HRGMv2_1590_2 HRGMv2_1590_2_26 26140 27141 + LacI
TC HRGMv2_1590_2 HRGMv2_1590_2_27 27399 29159 - 4.A.3.1.1
CAZyme HRGMv2_1590_2 HRGMv2_1590_2_28 29336 30778 - GH1
TF HRGMv2_1590_2 HRGMv2_1590_2_29 31120 32157 + LacI
CAZyme HRGMv2_1590_2 HRGMv2_1590_2_30 32422 33861 - GH1
TC HRGMv2_1590_2 HRGMv2_1590_2_31 33928 35700 - 4.A.3.1.1
TF HRGMv2_1590_2 HRGMv2_1590_2_32 36058 37062 + LacI
TC HRGMv2_1590_2 HRGMv2_1590_2_33 37277 37615 + 4.A.3.1.2
Gene ID: HRGMv2_1590_2_21
Type: TC
Location: 19552 - 20034 (+)
Gene ID: HRGMv2_1590_2_22
Type: sulfatase
Location: 20361 - 21413 (-)
Gene ID: HRGMv2_1590_2_23
Type: TF
Location: 21620 - 22384 (+)
Gene ID: HRGMv2_1590_2_24
Type: CAZyme
Location: 22581 - 24002 (-)
Gene ID: HRGMv2_1590_2_25
Type: TC
Location: 24078 - 25856 (-)
Gene ID: HRGMv2_1590_2_26
Type: TF
Location: 26140 - 27141 (+)
Gene ID: HRGMv2_1590_2_27
Type: TC
Location: 27399 - 29159 (-)
Gene ID: HRGMv2_1590_2_28
Type: CAZyme
Location: 29336 - 30778 (-)
Gene ID: HRGMv2_1590_2_29
Type: TF
Location: 31120 - 32157 (+)
Gene ID: HRGMv2_1590_2_30
Type: CAZyme
Location: 32422 - 33861 (-)
Gene ID: HRGMv2_1590_2_31
Type: TC
Location: 33928 - 35700 (-)
Gene ID: HRGMv2_1590_2_32
Type: TF
Location: 36058 - 37062 (+)
Gene ID: HRGMv2_1590_2_33
Type: TC
Location: 37277 - 37615 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1590_2_29 vegetarian > omnivore 1.07750 0.02677

🧭 Explore Read Mapping of CGC

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