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Cluster: HRGMv2_1590_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1590_2 HRGMv2_1590_2_9 9051 9494 + 4.A.6.1.16
pfam HRGMv2_1590_2 HRGMv2_1590_2_10 9494 9775 + YajC
TC HRGMv2_1590_2 HRGMv2_1590_2_11 9812 10294 + 4.A.6.1.4
TC HRGMv2_1590_2 HRGMv2_1590_2_12 10385 11185 + 4.A.6.1.4
TC HRGMv2_1590_2 HRGMv2_1590_2_13 11175 12257 + 4.A.6.1.4
TF HRGMv2_1590_2 HRGMv2_1590_2_14 12443 13174 + GntR
STP HRGMv2_1590_2 HRGMv2_1590_2_15 13289 14455 + SIS | SIS
CAZyme HRGMv2_1590_2 HRGMv2_1590_2_16 14573 15742 + CE9
Gene ID: HRGMv2_1590_2_9
Type: TC
Location: 9051 - 9494 (+)
Gene ID: HRGMv2_1590_2_10
Type: pfam
Location: 9494 - 9775 (+)
Gene ID: HRGMv2_1590_2_11
Type: TC
Location: 9812 - 10294 (+)
Gene ID: HRGMv2_1590_2_12
Type: TC
Location: 10385 - 11185 (+)
Gene ID: HRGMv2_1590_2_13
Type: TC
Location: 11175 - 12257 (+)
Gene ID: HRGMv2_1590_2_14
Type: TF
Location: 12443 - 13174 (+)
Gene ID: HRGMv2_1590_2_15
Type: STP
Location: 13289 - 14455 (+)
Gene ID: HRGMv2_1590_2_16
Type: CAZyme
Location: 14573 - 15742 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1590_2_10 vegan > omnivore 1.00298 0.00863

🧭 Explore Read Mapping of CGC

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