dbCAN Logo

Cluster: HRGMv2_1589_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1589_21 HRGMv2_1589_21_10 9626 11113 + 4.A.1.1.7
TF HRGMv2_1589_21 HRGMv2_1589_21_11 11346 12077 + GntR
CAZyme HRGMv2_1589_21 HRGMv2_1589_21_12 12221 13390 + CE9
pfam HRGMv2_1589_21 HRGMv2_1589_21_13 13423 13896 + DUF386
NULL(UNKNOWN) HRGMv2_1589_21 HRGMv2_1589_21_14 14412 14921 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1589_21 HRGMv2_1589_21_15 15412 15894 + 4.A.6.1.5
sulfatase HRGMv2_1589_21 HRGMv2_1589_21_16 16671 17723 - S1_4
TF HRGMv2_1589_21 HRGMv2_1589_21_17 17929 18693 + HTH_DeoR
CAZyme HRGMv2_1589_21 HRGMv2_1589_21_18 18889 20310 - GH1
TC HRGMv2_1589_21 HRGMv2_1589_21_19 20386 22170 - 4.A.3.1.1
TF HRGMv2_1589_21 HRGMv2_1589_21_20 22447 23457 + LacI
CAZyme HRGMv2_1589_21 HRGMv2_1589_21_21 23895 24827 - GH1
Gene ID: HRGMv2_1589_21_10
Type: TC
Location: 9626 - 11113 (+)
Gene ID: HRGMv2_1589_21_11
Type: TF
Location: 11346 - 12077 (+)
Gene ID: HRGMv2_1589_21_12
Type: CAZyme
Location: 12221 - 13390 (+)
Gene ID: HRGMv2_1589_21_13
Type: pfam
Location: 13423 - 13896 (+)
Gene ID: HRGMv2_1589_21_14
Type:
Location: 14412 - 14921 (-)
Gene ID: HRGMv2_1589_21_15
Type: TC
Location: 15412 - 15894 (+)
Gene ID: HRGMv2_1589_21_16
Type: sulfatase
Location: 16671 - 17723 (-)
Gene ID: HRGMv2_1589_21_17
Type: TF
Location: 17929 - 18693 (+)
Gene ID: HRGMv2_1589_21_18
Type: CAZyme
Location: 18889 - 20310 (-)
Gene ID: HRGMv2_1589_21_19
Type: TC
Location: 20386 - 22170 (-)
Gene ID: HRGMv2_1589_21_20
Type: TF
Location: 22447 - 23457 (+)
Gene ID: HRGMv2_1589_21_21
Type: CAZyme
Location: 23895 - 24827 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1589_21_11 vegetarian > vegan 3.31457 0.00918

🧭 Explore Read Mapping of CGC

← Back to Cluster List