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Cluster: HRGMv2_1589_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1589_18 HRGMv2_1589_18_1 2 541 - 3.A.1.132.3
pfam HRGMv2_1589_18 HRGMv2_1589_18_2 803 3682 + UvrA_DNA-bind | UvrA_inter
pfam HRGMv2_1589_18 HRGMv2_1589_18_3 3816 4316 + tRNA_edit
TC HRGMv2_1589_18 HRGMv2_1589_18_4 4320 6623 + 2.A.66.4.4
pfam HRGMv2_1589_18 HRGMv2_1589_18_5 6630 8570 + GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_1589_18 HRGMv2_1589_18_6 8936 10549 + 3.A.1.5.27
TC HRGMv2_1589_18 HRGMv2_1589_18_7 10707 11663 + 3.A.1.5.38
TC HRGMv2_1589_18 HRGMv2_1589_18_8 11667 13682 + 3.A.1.5.25
TC HRGMv2_1589_18 HRGMv2_1589_18_9 13683 14510 + 3.A.1.5.27
CAZyme HRGMv2_1589_18 HRGMv2_1589_18_10 14642 15568 + CE7
Gene ID: HRGMv2_1589_18_1
Type: TC
Location: 2 - 541 (-)
Gene ID: HRGMv2_1589_18_2
Type: pfam
Location: 803 - 3682 (+)
Gene ID: HRGMv2_1589_18_3
Type: pfam
Location: 3816 - 4316 (+)
Gene ID: HRGMv2_1589_18_4
Type: TC
Location: 4320 - 6623 (+)
Gene ID: HRGMv2_1589_18_5
Type: pfam
Location: 6630 - 8570 (+)
Gene ID: HRGMv2_1589_18_6
Type: TC
Location: 8936 - 10549 (+)
Gene ID: HRGMv2_1589_18_7
Type: TC
Location: 10707 - 11663 (+)
Gene ID: HRGMv2_1589_18_8
Type: TC
Location: 11667 - 13682 (+)
Gene ID: HRGMv2_1589_18_9
Type: TC
Location: 13683 - 14510 (+)
Gene ID: HRGMv2_1589_18_10
Type: CAZyme
Location: 14642 - 15568 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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