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Cluster: HRGMv2_1589_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1589_5 HRGMv2_1589_5_7 3568 4944 - GH13_20
TC HRGMv2_1589_5 HRGMv2_1589_5_8 5265 6449 - 2.A.1.2.18
TC HRGMv2_1589_5 HRGMv2_1589_5_9 6572 8932 - 9.A.8.1.6
NULL(UNKNOWN) HRGMv2_1589_5 HRGMv2_1589_5_10 9054 9374 - NULL(UNKNOWN)
[View Structural Homologs]
peptidase HRGMv2_1589_5 HRGMv2_1589_5_11 9422 10321 - S09.UPW
TC HRGMv2_1589_5 HRGMv2_1589_5_12 10490 11131 + 4.A.1.2.6
TC HRGMv2_1589_5 HRGMv2_1589_5_13 11367 13301 + 9.B.97.5.1
pfam HRGMv2_1589_5 HRGMv2_1589_5_14 13438 14841 + tRNA-synt_2 | tRNA_anti-codon
pfam HRGMv2_1589_5 HRGMv2_1589_5_15 15099 15887 + WYL
TC HRGMv2_1589_5 HRGMv2_1589_5_16 16047 17027 + 3.A.1.34.1
TC HRGMv2_1589_5 HRGMv2_1589_5_17 17232 18155 + 3.A.1.34.1
TC HRGMv2_1589_5 HRGMv2_1589_5_18 18148 18942 + 3.A.1.34.1
Gene ID: HRGMv2_1589_5_7
Type: CAZyme
Location: 3568 - 4944 (-)
Gene ID: HRGMv2_1589_5_8
Type: TC
Location: 5265 - 6449 (-)
Gene ID: HRGMv2_1589_5_9
Type: TC
Location: 6572 - 8932 (-)
Gene ID: HRGMv2_1589_5_10
Type:
Location: 9054 - 9374 (-)
Gene ID: HRGMv2_1589_5_11
Type: peptidase
Location: 9422 - 10321 (-)
Gene ID: HRGMv2_1589_5_12
Type: TC
Location: 10490 - 11131 (+)
Gene ID: HRGMv2_1589_5_13
Type: TC
Location: 11367 - 13301 (+)
Gene ID: HRGMv2_1589_5_14
Type: pfam
Location: 13438 - 14841 (+)
Gene ID: HRGMv2_1589_5_15
Type: pfam
Location: 15099 - 15887 (+)
Gene ID: HRGMv2_1589_5_16
Type: TC
Location: 16047 - 17027 (+)
Gene ID: HRGMv2_1589_5_17
Type: TC
Location: 17232 - 18155 (+)
Gene ID: HRGMv2_1589_5_18
Type: TC
Location: 18148 - 18942 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1589_5_13 vegan > omnivore 1.40851 0.02258
HRGMv2_1589_5_18 vegetarian > vegan 1.02730 0.00085

🧭 Explore Read Mapping of CGC

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