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Cluster: HRGMv2_1588_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1588_10 HRGMv2_1588_10_30 34211 34918 + 1.C.82.1.1
pfam HRGMv2_1588_10 HRGMv2_1588_10_31 35044 35754 - Metallophos | Metallophos_2
pfam HRGMv2_1588_10 HRGMv2_1588_10_32 35751 37667 - Bmp
TC HRGMv2_1588_10 HRGMv2_1588_10_33 37805 38584 - 1.A.23.4.10
TC HRGMv2_1588_10 HRGMv2_1588_10_34 38727 39521 - 3.A.1.34.1
TC HRGMv2_1588_10 HRGMv2_1588_10_35 39514 40437 - 3.A.1.34.1
TC HRGMv2_1588_10 HRGMv2_1588_10_36 40642 41622 - 3.A.1.34.1
NULL(UNKNOWN) HRGMv2_1588_10 HRGMv2_1588_10_37 41783 42568 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1588_10 HRGMv2_1588_10_38 42818 44221 - tRNA-synt_2 | tRNA_anti-codon
TC HRGMv2_1588_10 HRGMv2_1588_10_39 44403 44966 - 4.A.1.2.6
peptidase HRGMv2_1588_10 HRGMv2_1588_10_40 45211 46110 + S09.UPW
NULL(UNKNOWN) HRGMv2_1588_10 HRGMv2_1588_10_41 46158 46478 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1588_10 HRGMv2_1588_10_42 46600 48960 + 9.A.8.1.6
TC HRGMv2_1588_10 HRGMv2_1588_10_43 49280 50944 + 4.A.1.1.3
TF HRGMv2_1588_10 HRGMv2_1588_10_44 51007 51759 - HTH_6
CAZyme HRGMv2_1588_10 HRGMv2_1588_10_45 51934 53307 + GH4
NULL(UNKNOWN) HRGMv2_1588_10 HRGMv2_1588_10_46 53473 54225 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1588_10 HRGMv2_1588_10_47 54400 55596 + 2.A.1.2.18
CAZyme HRGMv2_1588_10 HRGMv2_1588_10_48 55944 57320 + GH13_20
Gene ID: HRGMv2_1588_10_30
Type: TC
Location: 34211 - 34918 (+)
Gene ID: HRGMv2_1588_10_31
Type: pfam
Location: 35044 - 35754 (-)
Gene ID: HRGMv2_1588_10_32
Type: pfam
Location: 35751 - 37667 (-)
Gene ID: HRGMv2_1588_10_33
Type: TC
Location: 37805 - 38584 (-)
Gene ID: HRGMv2_1588_10_34
Type: TC
Location: 38727 - 39521 (-)
Gene ID: HRGMv2_1588_10_35
Type: TC
Location: 39514 - 40437 (-)
Gene ID: HRGMv2_1588_10_36
Type: TC
Location: 40642 - 41622 (-)
Gene ID: HRGMv2_1588_10_37
Type:
Location: 41783 - 42568 (-)
Gene ID: HRGMv2_1588_10_38
Type: pfam
Location: 42818 - 44221 (-)
Gene ID: HRGMv2_1588_10_39
Type: TC
Location: 44403 - 44966 (-)
Gene ID: HRGMv2_1588_10_40
Type: peptidase
Location: 45211 - 46110 (+)
Gene ID: HRGMv2_1588_10_41
Type:
Location: 46158 - 46478 (+)
Gene ID: HRGMv2_1588_10_42
Type: TC
Location: 46600 - 48960 (+)
Gene ID: HRGMv2_1588_10_43
Type: TC
Location: 49280 - 50944 (+)
Gene ID: HRGMv2_1588_10_44
Type: TF
Location: 51007 - 51759 (-)
Gene ID: HRGMv2_1588_10_45
Type: CAZyme
Location: 51934 - 53307 (+)
Gene ID: HRGMv2_1588_10_46
Type:
Location: 53473 - 54225 (+)
Gene ID: HRGMv2_1588_10_47
Type: TC
Location: 54400 - 55596 (+)
Gene ID: HRGMv2_1588_10_48
Type: CAZyme
Location: 55944 - 57320 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1588_10_45 vegan > omnivore 1.50868 0.00863
HRGMv2_1588_10_46 vegan > omnivore 1.72182 0.00863

🧭 Explore Read Mapping of CGC

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