Cluster: HRGMv2_1588_CGC17
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate: host glycan
- Genome ID: HRGMv2_1588
- CGC Family ID: CGCFAM_00243
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1588_40 | HRGMv2_1588_40_3 | 1811 | 2980 | + | CE9 |
| pfam | HRGMv2_1588_40 | HRGMv2_1588_40_4 | 3013 | 3486 | + | DUF386 |
| TC | HRGMv2_1588_40 | HRGMv2_1588_40_5 | 3933 | 4415 | + | 4.A.6.1.5 |
| CAZyme | HRGMv2_1588_40 | HRGMv2_1588_40_6 | 4827 | 6623 | + | GH35 |
| TC | HRGMv2_1588_40 | HRGMv2_1588_40_7 | 6626 | 7090 | + | 4.A.6.1.18 |
| TC | HRGMv2_1588_40 | HRGMv2_1588_40_8 | 7184 | 8071 | + | 4.A.6.1.18 |
| TC | HRGMv2_1588_40 | HRGMv2_1588_40_9 | 8061 | 8900 | + | 4.A.6.1.18 |
| NULL(UNKNOWN) | HRGMv2_1588_40 | HRGMv2_1588_40_10 | 9089 | 9712 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1588_40 | HRGMv2_1588_40_11 | 9791 | 10219 | + | 4.A.6.1.8 |
| TF | HRGMv2_1588_40 | HRGMv2_1588_40_12 | 10307 | 11041 | + | GntR |
| STP | HRGMv2_1588_40 | HRGMv2_1588_40_13 | 11153 | 12319 | + | SIS | SIS |
| CAZyme | HRGMv2_1588_40 | HRGMv2_1588_40_14 | 12438 | 13607 | + | CE9 |
Gene ID: HRGMv2_1588_40_3
Type: CAZyme
Location: 1811 - 2980 (+)
Type: CAZyme
Location: 1811 - 2980 (+)
Gene ID: HRGMv2_1588_40_4
Type: pfam
Location: 3013 - 3486 (+)
Type: pfam
Location: 3013 - 3486 (+)
Gene ID: HRGMv2_1588_40_5
Type: TC
Location: 3933 - 4415 (+)
Type: TC
Location: 3933 - 4415 (+)
Gene ID: HRGMv2_1588_40_6
Type: CAZyme
Location: 4827 - 6623 (+)
Type: CAZyme
Location: 4827 - 6623 (+)
Gene ID: HRGMv2_1588_40_7
Type: TC
Location: 6626 - 7090 (+)
Type: TC
Location: 6626 - 7090 (+)
Gene ID: HRGMv2_1588_40_8
Type: TC
Location: 7184 - 8071 (+)
Type: TC
Location: 7184 - 8071 (+)
Gene ID: HRGMv2_1588_40_9
Type: TC
Location: 8061 - 8900 (+)
Type: TC
Location: 8061 - 8900 (+)
Gene ID: HRGMv2_1588_40_10
Type:
Location: 9089 - 9712 (+)
Type:
Location: 9089 - 9712 (+)
Gene ID: HRGMv2_1588_40_11
Type: TC
Location: 9791 - 10219 (+)
Type: TC
Location: 9791 - 10219 (+)
Gene ID: HRGMv2_1588_40_12
Type: TF
Location: 10307 - 11041 (+)
Type: TF
Location: 10307 - 11041 (+)
Gene ID: HRGMv2_1588_40_13
Type: STP
Location: 11153 - 12319 (+)
Type: STP
Location: 11153 - 12319 (+)
Gene ID: HRGMv2_1588_40_14
Type: CAZyme
Location: 12438 - 13607 (+)
Type: CAZyme
Location: 12438 - 13607 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1588_40_6 | vegetarian > vegan | 2.87140 | 0.02369 |
| HRGMv2_1588_40_7 | vegetarian > vegan | 3.40944 | 0.02258 |
| HRGMv2_1588_40_9 | vegetarian > vegan | 2.62203 | 0.02258 |