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Cluster: HRGMv2_1588_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1588_32 HRGMv2_1588_32_3 3034 4539 + GH77
CAZyme HRGMv2_1588_32 HRGMv2_1588_32_4 4668 6935 + GT35
TC HRGMv2_1588_32 HRGMv2_1588_32_5 7391 8590 - 3.A.1.1.22
TC HRGMv2_1588_32 HRGMv2_1588_32_6 8659 9498 - 3.A.1.1.45
TC HRGMv2_1588_32 HRGMv2_1588_32_7 9498 10352 - 3.A.1.1.45
TC HRGMv2_1588_32 HRGMv2_1588_32_8 10440 11756 - 3.A.1.1.45
TF HRGMv2_1588_32 HRGMv2_1588_32_9 12050 12769 - GntR
NULL(UNKNOWN) HRGMv2_1588_32 HRGMv2_1588_32_10 12853 12972 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1588_32 HRGMv2_1588_32_11 12994 15444 + 4.A.1.1.8
Gene ID: HRGMv2_1588_32_3
Type: CAZyme
Location: 3034 - 4539 (+)
Gene ID: HRGMv2_1588_32_4
Type: CAZyme
Location: 4668 - 6935 (+)
Gene ID: HRGMv2_1588_32_5
Type: TC
Location: 7391 - 8590 (-)
Gene ID: HRGMv2_1588_32_6
Type: TC
Location: 8659 - 9498 (-)
Gene ID: HRGMv2_1588_32_7
Type: TC
Location: 9498 - 10352 (-)
Gene ID: HRGMv2_1588_32_8
Type: TC
Location: 10440 - 11756 (-)
Gene ID: HRGMv2_1588_32_9
Type: TF
Location: 12050 - 12769 (-)
Gene ID: HRGMv2_1588_32_10
Type:
Location: 12853 - 12972 (-)
Gene ID: HRGMv2_1588_32_11
Type: TC
Location: 12994 - 15444 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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