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Cluster: HRGMv2_1588_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1588_15 HRGMv2_1588_15_16 15354 16238 - CE7
TC HRGMv2_1588_15 HRGMv2_1588_15_17 16412 17239 - 3.A.1.5.27
TC HRGMv2_1588_15 HRGMv2_1588_15_18 17240 19255 - 3.A.1.5.25
TC HRGMv2_1588_15 HRGMv2_1588_15_19 19259 20215 - 3.A.1.5.38
TC HRGMv2_1588_15 HRGMv2_1588_15_20 20373 21986 - 3.A.1.5.27
pfam HRGMv2_1588_15 HRGMv2_1588_15_21 22352 24292 - GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_1588_15 HRGMv2_1588_15_22 24299 25981 - 2.A.66.4.4
Gene ID: HRGMv2_1588_15_16
Type: CAZyme
Location: 15354 - 16238 (-)
Gene ID: HRGMv2_1588_15_17
Type: TC
Location: 16412 - 17239 (-)
Gene ID: HRGMv2_1588_15_18
Type: TC
Location: 17240 - 19255 (-)
Gene ID: HRGMv2_1588_15_19
Type: TC
Location: 19259 - 20215 (-)
Gene ID: HRGMv2_1588_15_20
Type: TC
Location: 20373 - 21986 (-)
Gene ID: HRGMv2_1588_15_21
Type: pfam
Location: 22352 - 24292 (-)
Gene ID: HRGMv2_1588_15_22
Type: TC
Location: 24299 - 25981 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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