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Cluster: HRGMv2_1587_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1587_16 HRGMv2_1587_16_1 116 454 - 4.A.3.1.2
TF HRGMv2_1587_16 HRGMv2_1587_16_2 669 1673 - LacI
TC HRGMv2_1587_16 HRGMv2_1587_16_3 2030 3805 + 4.A.3.1.1
CAZyme HRGMv2_1587_16 HRGMv2_1587_16_4 3872 5311 + GH1
TF HRGMv2_1587_16 HRGMv2_1587_16_5 5647 6657 - LacI
TC HRGMv2_1587_16 HRGMv2_1587_16_6 6932 8710 + 4.A.3.1.1
CAZyme HRGMv2_1587_16 HRGMv2_1587_16_7 8786 10207 + GH1
NULL(UNKNOWN) HRGMv2_1587_16 HRGMv2_1587_16_8 10505 10771 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1587_16 HRGMv2_1587_16_9 10761 11066 + ParE_toxin
TC HRGMv2_1587_16 HRGMv2_1587_16_10 11426 13120 - 4.A.3.1.1
Gene ID: HRGMv2_1587_16_1
Type: TC
Location: 116 - 454 (-)
Gene ID: HRGMv2_1587_16_2
Type: TF
Location: 669 - 1673 (-)
Gene ID: HRGMv2_1587_16_3
Type: TC
Location: 2030 - 3805 (+)
Gene ID: HRGMv2_1587_16_4
Type: CAZyme
Location: 3872 - 5311 (+)
Gene ID: HRGMv2_1587_16_5
Type: TF
Location: 5647 - 6657 (-)
Gene ID: HRGMv2_1587_16_6
Type: TC
Location: 6932 - 8710 (+)
Gene ID: HRGMv2_1587_16_7
Type: CAZyme
Location: 8786 - 10207 (+)
Gene ID: HRGMv2_1587_16_8
Type:
Location: 10505 - 10771 (+)
Gene ID: HRGMv2_1587_16_9
Type: pfam
Location: 10761 - 11066 (+)
Gene ID: HRGMv2_1587_16_10
Type: TC
Location: 11426 - 13120 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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