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Cluster: HRGMv2_1587_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1587_5 HRGMv2_1587_5_5 2143 3519 - GH13_20
TC HRGMv2_1587_5 HRGMv2_1587_5_6 3673 4869 - 2.A.1.2.18
TC HRGMv2_1587_5 HRGMv2_1587_5_7 4993 7353 - 9.A.8.1.6
NULL(UNKNOWN) HRGMv2_1587_5 HRGMv2_1587_5_8 7475 7795 - NULL(UNKNOWN)
[View Structural Homologs]
peptidase HRGMv2_1587_5 HRGMv2_1587_5_9 7843 8742 - S09.UPW
TC HRGMv2_1587_5 HRGMv2_1587_5_10 8990 9553 + 4.A.1.2.6
pfam HRGMv2_1587_5 HRGMv2_1587_5_11 9735 11138 + tRNA-synt_2 | tRNA_anti-codon
NULL(UNKNOWN) HRGMv2_1587_5 HRGMv2_1587_5_12 11388 12173 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1587_5 HRGMv2_1587_5_13 12334 13314 + 3.A.1.34.1
TC HRGMv2_1587_5 HRGMv2_1587_5_14 13519 14442 + 3.A.1.34.1
TC HRGMv2_1587_5 HRGMv2_1587_5_15 14435 15229 + 3.A.1.34.1
Gene ID: HRGMv2_1587_5_5
Type: CAZyme
Location: 2143 - 3519 (-)
Gene ID: HRGMv2_1587_5_6
Type: TC
Location: 3673 - 4869 (-)
Gene ID: HRGMv2_1587_5_7
Type: TC
Location: 4993 - 7353 (-)
Gene ID: HRGMv2_1587_5_8
Type:
Location: 7475 - 7795 (-)
Gene ID: HRGMv2_1587_5_9
Type: peptidase
Location: 7843 - 8742 (-)
Gene ID: HRGMv2_1587_5_10
Type: TC
Location: 8990 - 9553 (+)
Gene ID: HRGMv2_1587_5_11
Type: pfam
Location: 9735 - 11138 (+)
Gene ID: HRGMv2_1587_5_12
Type:
Location: 11388 - 12173 (+)
Gene ID: HRGMv2_1587_5_13
Type: TC
Location: 12334 - 13314 (+)
Gene ID: HRGMv2_1587_5_14
Type: TC
Location: 13519 - 14442 (+)
Gene ID: HRGMv2_1587_5_15
Type: TC
Location: 14435 - 15229 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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