Cluster: HRGMv2_1587_CGC14
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1587
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1587_36 | HRGMv2_1587_36_3 | 3272 | 4336 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_1587_36 | HRGMv2_1587_36_4 | 4333 | 4665 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1587_36 | HRGMv2_1587_36_5 | 4665 | 5417 | - | GT32 |
| STP | HRGMv2_1587_36 | HRGMv2_1587_36_6 | 5440 | 6684 | - | Fer4 |
| pfam | HRGMv2_1587_36 | HRGMv2_1587_36_7 | 6693 | 7880 | - | PS_pyruv_trans |
| CAZyme | HRGMv2_1587_36 | HRGMv2_1587_36_8 | 7890 | 8924 | - | GT4 |
| TC | HRGMv2_1587_36 | HRGMv2_1587_36_9 | 8994 | 9743 | - | 9.B.18.1.2 |
Gene ID: HRGMv2_1587_36_3
Type: CAZyme
Location: 3272 - 4336 (-)
Type: CAZyme
Location: 3272 - 4336 (-)
Gene ID: HRGMv2_1587_36_4
Type:
Location: 4333 - 4665 (-)
Type:
Location: 4333 - 4665 (-)
Gene ID: HRGMv2_1587_36_5
Type: CAZyme
Location: 4665 - 5417 (-)
Type: CAZyme
Location: 4665 - 5417 (-)
Gene ID: HRGMv2_1587_36_6
Type: STP
Location: 5440 - 6684 (-)
Type: STP
Location: 5440 - 6684 (-)
Gene ID: HRGMv2_1587_36_7
Type: pfam
Location: 6693 - 7880 (-)
Type: pfam
Location: 6693 - 7880 (-)
Gene ID: HRGMv2_1587_36_8
Type: CAZyme
Location: 7890 - 8924 (-)
Type: CAZyme
Location: 7890 - 8924 (-)
Gene ID: HRGMv2_1587_36_9
Type: TC
Location: 8994 - 9743 (-)
Type: TC
Location: 8994 - 9743 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1587_36_9 | vegan > omnivore | 1.08021 | 0.00701 |