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Cluster: HRGMv2_1587_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1587_16 HRGMv2_1587_16_24 24990 26159 - CE9
STP HRGMv2_1587_16 HRGMv2_1587_16_25 26278 27444 - SIS | SIS
TF HRGMv2_1587_16 HRGMv2_1587_16_26 27559 28290 - GntR
TC HRGMv2_1587_16 HRGMv2_1587_16_27 28475 29557 - 4.A.6.1.4
TC HRGMv2_1587_16 HRGMv2_1587_16_28 29547 30347 - 4.A.6.1.4
TC HRGMv2_1587_16 HRGMv2_1587_16_29 30438 30920 - 4.A.6.1.4
pfam HRGMv2_1587_16 HRGMv2_1587_16_30 30957 31238 - YajC
TC HRGMv2_1587_16 HRGMv2_1587_16_31 31238 31681 - 4.A.6.1.16
Gene ID: HRGMv2_1587_16_24
Type: CAZyme
Location: 24990 - 26159 (-)
Gene ID: HRGMv2_1587_16_25
Type: STP
Location: 26278 - 27444 (-)
Gene ID: HRGMv2_1587_16_26
Type: TF
Location: 27559 - 28290 (-)
Gene ID: HRGMv2_1587_16_27
Type: TC
Location: 28475 - 29557 (-)
Gene ID: HRGMv2_1587_16_28
Type: TC
Location: 29547 - 30347 (-)
Gene ID: HRGMv2_1587_16_29
Type: TC
Location: 30438 - 30920 (-)
Gene ID: HRGMv2_1587_16_30
Type: pfam
Location: 30957 - 31238 (-)
Gene ID: HRGMv2_1587_16_31
Type: TC
Location: 31238 - 31681 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1587_16_30 vegan > omnivore 1.12139 0.00701

🧭 Explore Read Mapping of CGC

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