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Cluster: HRGMv2_1583_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1583_6 HRGMv2_1583_6_7 7823 8980 - GT4
CAZyme HRGMv2_1583_6 HRGMv2_1583_6_8 9015 9992 - GT2
CAZyme HRGMv2_1583_6 HRGMv2_1583_6_9 10195 10869 + GT2
pfam HRGMv2_1583_6 HRGMv2_1583_6_10 11315 12184 + Acyl_transf_3
pfam HRGMv2_1583_6 HRGMv2_1583_6_11 12717 14732 - DUF6541
CAZyme HRGMv2_1583_6 HRGMv2_1583_6_12 14773 16644 - GT2
CAZyme HRGMv2_1583_6 HRGMv2_1583_6_13 16814 18658 + GT2
CAZyme HRGMv2_1583_6 HRGMv2_1583_6_14 18690 19619 - GT81
TC HRGMv2_1583_6 HRGMv2_1583_6_15 19781 20626 + 3.A.1.103.6
TC HRGMv2_1583_6 HRGMv2_1583_6_16 20639 21406 + 3.A.1.103.1
Gene ID: HRGMv2_1583_6_7
Type: CAZyme
Location: 7823 - 8980 (-)
Gene ID: HRGMv2_1583_6_8
Type: CAZyme
Location: 9015 - 9992 (-)
Gene ID: HRGMv2_1583_6_9
Type: CAZyme
Location: 10195 - 10869 (+)
Gene ID: HRGMv2_1583_6_10
Type: pfam
Location: 11315 - 12184 (+)
Gene ID: HRGMv2_1583_6_11
Type: pfam
Location: 12717 - 14732 (-)
Gene ID: HRGMv2_1583_6_12
Type: CAZyme
Location: 14773 - 16644 (-)
Gene ID: HRGMv2_1583_6_13
Type: CAZyme
Location: 16814 - 18658 (+)
Gene ID: HRGMv2_1583_6_14
Type: CAZyme
Location: 18690 - 19619 (-)
Gene ID: HRGMv2_1583_6_15
Type: TC
Location: 19781 - 20626 (+)
Gene ID: HRGMv2_1583_6_16
Type: TC
Location: 20639 - 21406 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1583_6_13 vegan > omnivore 16.73022 0.01332
HRGMv2_1583_6_14 vegan > omnivore 1.66594 0.01332
HRGMv2_1583_6_15 vegan > omnivore 2.10306 0.01332

🧭 Explore Read Mapping of CGC

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