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Cluster: HRGMv2_1582_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1582_18 HRGMv2_1582_18_9 5887 7056 - CE9
STP HRGMv2_1582_18 HRGMv2_1582_18_10 7175 8341 - SIS | SIS
TF HRGMv2_1582_18 HRGMv2_1582_18_11 8456 9187 - GntR
TC HRGMv2_1582_18 HRGMv2_1582_18_12 9373 10455 - 4.A.6.1.4
TC HRGMv2_1582_18 HRGMv2_1582_18_13 10445 11245 - 4.A.6.1.4
TC HRGMv2_1582_18 HRGMv2_1582_18_14 11336 11818 - 4.A.6.1.4
pfam HRGMv2_1582_18 HRGMv2_1582_18_15 11855 12136 - YajC
TC HRGMv2_1582_18 HRGMv2_1582_18_16 12136 12579 - 4.A.6.1.16
Gene ID: HRGMv2_1582_18_9
Type: CAZyme
Location: 5887 - 7056 (-)
Gene ID: HRGMv2_1582_18_10
Type: STP
Location: 7175 - 8341 (-)
Gene ID: HRGMv2_1582_18_11
Type: TF
Location: 8456 - 9187 (-)
Gene ID: HRGMv2_1582_18_12
Type: TC
Location: 9373 - 10455 (-)
Gene ID: HRGMv2_1582_18_13
Type: TC
Location: 10445 - 11245 (-)
Gene ID: HRGMv2_1582_18_14
Type: TC
Location: 11336 - 11818 (-)
Gene ID: HRGMv2_1582_18_15
Type: pfam
Location: 11855 - 12136 (-)
Gene ID: HRGMv2_1582_18_16
Type: TC
Location: 12136 - 12579 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1582_18_15 vegan > omnivore 1.10858 0.00701

🧭 Explore Read Mapping of CGC

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