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Cluster: HRGMv2_1580_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1580_2 HRGMv2_1580_2_69 81005 81448 + 4.A.6.1.16
pfam HRGMv2_1580_2 HRGMv2_1580_2_70 81448 81729 + YajC
TC HRGMv2_1580_2 HRGMv2_1580_2_71 81766 82248 + 4.A.6.1.4
TC HRGMv2_1580_2 HRGMv2_1580_2_72 82339 83139 + 4.A.6.1.4
TC HRGMv2_1580_2 HRGMv2_1580_2_73 83129 84211 + 4.A.6.1.4
TF HRGMv2_1580_2 HRGMv2_1580_2_74 84397 85128 + GntR
STP HRGMv2_1580_2 HRGMv2_1580_2_75 85243 86409 + SIS | SIS
CAZyme HRGMv2_1580_2 HRGMv2_1580_2_76 86528 87697 + CE9
Gene ID: HRGMv2_1580_2_69
Type: TC
Location: 81005 - 81448 (+)
Gene ID: HRGMv2_1580_2_70
Type: pfam
Location: 81448 - 81729 (+)
Gene ID: HRGMv2_1580_2_71
Type: TC
Location: 81766 - 82248 (+)
Gene ID: HRGMv2_1580_2_72
Type: TC
Location: 82339 - 83139 (+)
Gene ID: HRGMv2_1580_2_73
Type: TC
Location: 83129 - 84211 (+)
Gene ID: HRGMv2_1580_2_74
Type: TF
Location: 84397 - 85128 (+)
Gene ID: HRGMv2_1580_2_75
Type: STP
Location: 85243 - 86409 (+)
Gene ID: HRGMv2_1580_2_76
Type: CAZyme
Location: 86528 - 87697 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1580_2_70 vegan > omnivore 1.08228 0.00701

🧭 Explore Read Mapping of CGC

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