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Cluster: HRGMv2_1580_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1580_1 HRGMv2_1580_1_12 14222 15034 + 3.A.1.103.4
TC HRGMv2_1580_1 HRGMv2_1580_1_13 15044 15799 + 3.A.1.103.1
CAZyme HRGMv2_1580_1 HRGMv2_1580_1_14 15801 17057 + GT2
CAZyme HRGMv2_1580_1 HRGMv2_1580_1_15 17097 18158 + GT2
CAZyme HRGMv2_1580_1 HRGMv2_1580_1_16 18180 19415 + GT4
pfam HRGMv2_1580_1 HRGMv2_1580_1_17 19467 19970 + IU_nuc_hydro
NULL(UNKNOWN) HRGMv2_1580_1 HRGMv2_1580_1_18 19867 20907 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_1580_1 HRGMv2_1580_1_19 21256 22218 - GT81
TC HRGMv2_1580_1 HRGMv2_1580_1_20 22341 23033 + 3.A.1.103.5
Gene ID: HRGMv2_1580_1_12
Type: TC
Location: 14222 - 15034 (+)
Gene ID: HRGMv2_1580_1_13
Type: TC
Location: 15044 - 15799 (+)
Gene ID: HRGMv2_1580_1_14
Type: CAZyme
Location: 15801 - 17057 (+)
Gene ID: HRGMv2_1580_1_15
Type: CAZyme
Location: 17097 - 18158 (+)
Gene ID: HRGMv2_1580_1_16
Type: CAZyme
Location: 18180 - 19415 (+)
Gene ID: HRGMv2_1580_1_17
Type: pfam
Location: 19467 - 19970 (+)
Gene ID: HRGMv2_1580_1_18
Type:
Location: 19867 - 20907 (-)
Gene ID: HRGMv2_1580_1_19
Type: CAZyme
Location: 21256 - 22218 (-)
Gene ID: HRGMv2_1580_1_20
Type: TC
Location: 22341 - 23033 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1580_1_13 vegetarian > vegan 1.26260 0.02773
HRGMv2_1580_1_15 vegetarian > vegan 5.51997 0.02773
HRGMv2_1580_1_16 vegetarian > vegan 3.66303 0.02773

🧭 Explore Read Mapping of CGC

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