Cluster: HRGMv2_1580_CGC17
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1580
- CGC Family ID: CGCFAM_00428
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1580_48 | HRGMv2_1580_48_1 | 2 | 934 | + | 4.A.1.2.2 |
| CAZyme | HRGMv2_1580_48 | HRGMv2_1580_48_2 | 1144 | 2457 | + | GH140 |
| NULL(UNKNOWN) | HRGMv2_1580_48 | HRGMv2_1580_48_3 | 2832 | 3158 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_1580_48 | HRGMv2_1580_48_4 | 3137 | 4375 | + | GerE |
| TC | HRGMv2_1580_48 | HRGMv2_1580_48_5 | 4474 | 7242 | - | 3.A.3.4.1 |
Gene ID: HRGMv2_1580_48_1
Type: TC
Location: 2 - 934 (+)
Type: TC
Location: 2 - 934 (+)
Gene ID: HRGMv2_1580_48_2
Type: CAZyme
Location: 1144 - 2457 (+)
Type: CAZyme
Location: 1144 - 2457 (+)
Gene ID: HRGMv2_1580_48_3
Type:
Location: 2832 - 3158 (+)
Type:
Location: 2832 - 3158 (+)
Gene ID: HRGMv2_1580_48_4
Type: TF
Location: 3137 - 4375 (+)
Type: TF
Location: 3137 - 4375 (+)
Gene ID: HRGMv2_1580_48_5
Type: TC
Location: 4474 - 7242 (-)
Type: TC
Location: 4474 - 7242 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.