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Cluster: HRGMv2_1580_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1580_1 HRGMv2_1580_1_1 2 1480 + CBM13
CAZyme HRGMv2_1580_1 HRGMv2_1580_1_2 1668 2621 - GT81
pfam HRGMv2_1580_1 HRGMv2_1580_1_3 2844 4673 + DUF6020
TC HRGMv2_1580_1 HRGMv2_1580_1_4 4666 5697 + 9.B.97.6.2
NULL(UNKNOWN) HRGMv2_1580_1 HRGMv2_1580_1_5 5716 7860 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1580_1 HRGMv2_1580_1_6 7927 8946 + 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | NAD_binding_10 | GDP_Man_Dehyd
CAZyme HRGMv2_1580_1 HRGMv2_1580_1_7 9212 10282 + GT2
CAZyme HRGMv2_1580_1 HRGMv2_1580_1_8 10301 11521 + GT2
Gene ID: HRGMv2_1580_1_1
Type: CAZyme
Location: 2 - 1480 (+)
Gene ID: HRGMv2_1580_1_2
Type: CAZyme
Location: 1668 - 2621 (-)
Gene ID: HRGMv2_1580_1_3
Type: pfam
Location: 2844 - 4673 (+)
Gene ID: HRGMv2_1580_1_4
Type: TC
Location: 4666 - 5697 (+)
Gene ID: HRGMv2_1580_1_5
Type:
Location: 5716 - 7860 (+)
Gene ID: HRGMv2_1580_1_6
Type: pfam
Location: 7927 - 8946 (+)
Gene ID: HRGMv2_1580_1_7
Type: CAZyme
Location: 9212 - 10282 (+)
Gene ID: HRGMv2_1580_1_8
Type: CAZyme
Location: 10301 - 11521 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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