Cluster: HRGMv2_1579_CGC14
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1579
- CGC Family ID: CGCFAM_00019
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1579_33 | HRGMv2_1579_33_7 | 5635 | 7977 | - | 3.A.3.5.15 |
| STP | HRGMv2_1579_33 | HRGMv2_1579_33_8 | 8307 | 10391 | - | Pkinase |
| STP | HRGMv2_1579_33 | HRGMv2_1579_33_9 | 10563 | 11525 | - | FHA |
| TC | HRGMv2_1579_33 | HRGMv2_1579_33_10 | 12032 | 14284 | + | 1.I.1.1.3 |
| STP | HRGMv2_1579_33 | HRGMv2_1579_33_11 | 14906 | 15667 | + | Fer4 |
| TC | HRGMv2_1579_33 | HRGMv2_1579_33_12 | 16014 | 16526 | + | 4.A.1.2.2 |
| pfam | HRGMv2_1579_33 | HRGMv2_1579_33_13 | 16533 | 17399 | + | PRD | PRD | CAT_RBD |
| TC | HRGMv2_1579_33 | HRGMv2_1579_33_14 | 17499 | 19115 | + | 4.A.1.1.3 |
| CAZyme | HRGMv2_1579_33 | HRGMv2_1579_33_15 | 19119 | 20501 | + | GH4 |
| STP | HRGMv2_1579_33 | HRGMv2_1579_33_16 | 20758 | 22590 | + | Pyr_redox_2 |
| TC | HRGMv2_1579_33 | HRGMv2_1579_33_17 | 22584 | 24395 | + | 3.D.1.5.1 |
| NULL(UNKNOWN) | HRGMv2_1579_33 | HRGMv2_1579_33_18 | 24398 | 25453 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1579_33 | HRGMv2_1579_33_19 | 25457 | 26833 | + | 3.A.1.17.10 |
Gene ID: HRGMv2_1579_33_7
Type: TC
Location: 5635 - 7977 (-)
Type: TC
Location: 5635 - 7977 (-)
Gene ID: HRGMv2_1579_33_8
Type: STP
Location: 8307 - 10391 (-)
Type: STP
Location: 8307 - 10391 (-)
Gene ID: HRGMv2_1579_33_9
Type: STP
Location: 10563 - 11525 (-)
Type: STP
Location: 10563 - 11525 (-)
Gene ID: HRGMv2_1579_33_10
Type: TC
Location: 12032 - 14284 (+)
Type: TC
Location: 12032 - 14284 (+)
Gene ID: HRGMv2_1579_33_11
Type: STP
Location: 14906 - 15667 (+)
Type: STP
Location: 14906 - 15667 (+)
Gene ID: HRGMv2_1579_33_12
Type: TC
Location: 16014 - 16526 (+)
Type: TC
Location: 16014 - 16526 (+)
Gene ID: HRGMv2_1579_33_13
Type: pfam
Location: 16533 - 17399 (+)
Type: pfam
Location: 16533 - 17399 (+)
Gene ID: HRGMv2_1579_33_14
Type: TC
Location: 17499 - 19115 (+)
Type: TC
Location: 17499 - 19115 (+)
Gene ID: HRGMv2_1579_33_15
Type: CAZyme
Location: 19119 - 20501 (+)
Type: CAZyme
Location: 19119 - 20501 (+)
Gene ID: HRGMv2_1579_33_16
Type: STP
Location: 20758 - 22590 (+)
Type: STP
Location: 20758 - 22590 (+)
Gene ID: HRGMv2_1579_33_17
Type: TC
Location: 22584 - 24395 (+)
Type: TC
Location: 22584 - 24395 (+)
Gene ID: HRGMv2_1579_33_18
Type:
Location: 24398 - 25453 (+)
Type:
Location: 24398 - 25453 (+)
Gene ID: HRGMv2_1579_33_19
Type: TC
Location: 25457 - 26833 (+)
Type: TC
Location: 25457 - 26833 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.