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Cluster: HRGMv2_1579_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1579_11 HRGMv2_1579_11_16 15537 15980 + 4.A.6.1.16
pfam HRGMv2_1579_11 HRGMv2_1579_11_17 15980 16261 + YajC
TC HRGMv2_1579_11 HRGMv2_1579_11_18 16298 16780 + 4.A.6.1.4
TC HRGMv2_1579_11 HRGMv2_1579_11_19 16871 17671 + 4.A.6.1.4
TC HRGMv2_1579_11 HRGMv2_1579_11_20 17661 18743 + 4.A.6.1.4
TF HRGMv2_1579_11 HRGMv2_1579_11_21 18929 19660 + GntR
STP HRGMv2_1579_11 HRGMv2_1579_11_22 19775 20941 + SIS | SIS
CAZyme HRGMv2_1579_11 HRGMv2_1579_11_23 21059 22228 + CE9
Gene ID: HRGMv2_1579_11_16
Type: TC
Location: 15537 - 15980 (+)
Gene ID: HRGMv2_1579_11_17
Type: pfam
Location: 15980 - 16261 (+)
Gene ID: HRGMv2_1579_11_18
Type: TC
Location: 16298 - 16780 (+)
Gene ID: HRGMv2_1579_11_19
Type: TC
Location: 16871 - 17671 (+)
Gene ID: HRGMv2_1579_11_20
Type: TC
Location: 17661 - 18743 (+)
Gene ID: HRGMv2_1579_11_21
Type: TF
Location: 18929 - 19660 (+)
Gene ID: HRGMv2_1579_11_22
Type: STP
Location: 19775 - 20941 (+)
Gene ID: HRGMv2_1579_11_23
Type: CAZyme
Location: 21059 - 22228 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1579_11_17 vegan > omnivore 1.03932 0.00566

🧭 Explore Read Mapping of CGC

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