Cluster: HRGMv2_1578_CGC9
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_1578
- CGC Family ID: CGCFAM_00018
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1578_5 | HRGMv2_1578_5_92 | 97182 | 98423 | + | GT111 |
| CAZyme | HRGMv2_1578_5 | HRGMv2_1578_5_93 | 98499 | 100898 | + | GT2 | GT2 |
| pfam | HRGMv2_1578_5 | HRGMv2_1578_5_94 | 100975 | 103158 | - | DUF7654 | DUF7657 |
| pfam | HRGMv2_1578_5 | HRGMv2_1578_5_95 | 103185 | 103541 | - | DUF2304 |
| CAZyme | HRGMv2_1578_5 | HRGMv2_1578_5_96 | 103541 | 104239 | - | GT2 |
| CAZyme | HRGMv2_1578_5 | HRGMv2_1578_5_97 | 104278 | 105519 | - | GT4 |
| pfam | HRGMv2_1578_5 | HRGMv2_1578_5_98 | 105519 | 106694 | - | Epimerase_2 |
| pfam | HRGMv2_1578_5 | HRGMv2_1578_5_99 | 107840 | 109057 | - | Epimerase | Polysacc_synt_C |
| TC | HRGMv2_1578_5 | HRGMv2_1578_5_100 | 109059 | 110114 | - | 9.B.18.2.1 |
| NULL(UNKNOWN) | HRGMv2_1578_5 | HRGMv2_1578_5_101 | 110363 | 111427 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1578_5 | HRGMv2_1578_5_102 | 111601 | 114381 | - | GH73 |
Gene ID: HRGMv2_1578_5_92
Type: CAZyme
Location: 97182 - 98423 (+)
Type: CAZyme
Location: 97182 - 98423 (+)
Gene ID: HRGMv2_1578_5_93
Type: CAZyme
Location: 98499 - 100898 (+)
Type: CAZyme
Location: 98499 - 100898 (+)
Gene ID: HRGMv2_1578_5_94
Type: pfam
Location: 100975 - 103158 (-)
Type: pfam
Location: 100975 - 103158 (-)
Gene ID: HRGMv2_1578_5_95
Type: pfam
Location: 103185 - 103541 (-)
Type: pfam
Location: 103185 - 103541 (-)
Gene ID: HRGMv2_1578_5_96
Type: CAZyme
Location: 103541 - 104239 (-)
Type: CAZyme
Location: 103541 - 104239 (-)
Gene ID: HRGMv2_1578_5_97
Type: CAZyme
Location: 104278 - 105519 (-)
Type: CAZyme
Location: 104278 - 105519 (-)
Gene ID: HRGMv2_1578_5_98
Type: pfam
Location: 105519 - 106694 (-)
Type: pfam
Location: 105519 - 106694 (-)
Gene ID: HRGMv2_1578_5_99
Type: pfam
Location: 107840 - 109057 (-)
Type: pfam
Location: 107840 - 109057 (-)
Gene ID: HRGMv2_1578_5_100
Type: TC
Location: 109059 - 110114 (-)
Type: TC
Location: 109059 - 110114 (-)
Gene ID: HRGMv2_1578_5_101
Type:
Location: 110363 - 111427 (-)
Type:
Location: 110363 - 111427 (-)
Gene ID: HRGMv2_1578_5_102
Type: CAZyme
Location: 111601 - 114381 (-)
Type: CAZyme
Location: 111601 - 114381 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1578_5_92 | vegan > omnivore | 1.16710 | 0.03783 |
| HRGMv2_1578_5_92 | vegetarian > omnivore | 1.77755 | 0.02194 |
| HRGMv2_1578_5_93 | vegan > omnivore | 2.39118 | 0.03783 |
| HRGMv2_1578_5_93 | vegetarian > omnivore | 3.02900 | 0.02225 |
| HRGMv2_1578_5_95 | vegan > omnivore | 1.15842 | 0.03783 |
| HRGMv2_1578_5_95 | vegetarian > omnivore | 1.48188 | 0.02225 |
| HRGMv2_1578_5_96 | vegan > omnivore | 1.60035 | 0.03783 |
| HRGMv2_1578_5_96 | vegetarian > omnivore | 2.62042 | 0.02194 |
| HRGMv2_1578_5_97 | vegan > omnivore | 1.35726 | 0.03783 |
| HRGMv2_1578_5_97 | vegetarian > omnivore | 1.44603 | 0.02225 |
| HRGMv2_1578_5_99 | vegetarian > omnivore | 1.31196 | 0.01930 |
| HRGMv2_1578_5_99 | vegetarian > vegan | 1.16581 | 0.01588 |
| HRGMv2_1578_5_101 | vegan > omnivore | 1.09472 | 0.03783 |
| HRGMv2_1578_5_101 | vegetarian > omnivore | 1.96768 | 0.02225 |
| HRGMv2_1578_5_102 | vegan > omnivore | 1.43180 | 0.03783 |
| HRGMv2_1578_5_102 | vegetarian > omnivore | 1.99167 | 0.02225 |