Cluster: HRGMv2_1578_CGC5
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1578
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1578_2 | HRGMv2_1578_2_54 | 55226 | 56647 | - | GH1 |
| TC | HRGMv2_1578_2 | HRGMv2_1578_2_55 | 56724 | 58508 | - | 4.A.3.1.1 |
| TF | HRGMv2_1578_2 | HRGMv2_1578_2_56 | 58784 | 59794 | + | LacI |
| CAZyme | HRGMv2_1578_2 | HRGMv2_1578_2_57 | 60130 | 61569 | - | GH1 |
| TC | HRGMv2_1578_2 | HRGMv2_1578_2_58 | 61636 | 63405 | - | 4.A.3.1.1 |
| TF | HRGMv2_1578_2 | HRGMv2_1578_2_59 | 63733 | 64767 | + | LacI |
| TC | HRGMv2_1578_2 | HRGMv2_1578_2_60 | 64982 | 65320 | + | 4.A.3.1.2 |
Gene ID: HRGMv2_1578_2_54
Type: CAZyme
Location: 55226 - 56647 (-)
Type: CAZyme
Location: 55226 - 56647 (-)
Gene ID: HRGMv2_1578_2_55
Type: TC
Location: 56724 - 58508 (-)
Type: TC
Location: 56724 - 58508 (-)
Gene ID: HRGMv2_1578_2_56
Type: TF
Location: 58784 - 59794 (+)
Type: TF
Location: 58784 - 59794 (+)
Gene ID: HRGMv2_1578_2_57
Type: CAZyme
Location: 60130 - 61569 (-)
Type: CAZyme
Location: 60130 - 61569 (-)
Gene ID: HRGMv2_1578_2_58
Type: TC
Location: 61636 - 63405 (-)
Type: TC
Location: 61636 - 63405 (-)
Gene ID: HRGMv2_1578_2_59
Type: TF
Location: 63733 - 64767 (+)
Type: TF
Location: 63733 - 64767 (+)
Gene ID: HRGMv2_1578_2_60
Type: TC
Location: 64982 - 65320 (+)
Type: TC
Location: 64982 - 65320 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.