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Cluster: HRGMv2_1578_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1578_22 HRGMv2_1578_22_11 15125 17575 - 4.A.1.1.8
NULL(UNKNOWN) HRGMv2_1578_22 HRGMv2_1578_22_12 17597 17716 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_1578_22 HRGMv2_1578_22_13 17800 18519 + GntR
TC HRGMv2_1578_22 HRGMv2_1578_22_14 18826 20142 + 3.A.1.1.45
TC HRGMv2_1578_22 HRGMv2_1578_22_15 20230 21084 + 3.A.1.1.45
TC HRGMv2_1578_22 HRGMv2_1578_22_16 21084 21923 + 3.A.1.1.45
TC HRGMv2_1578_22 HRGMv2_1578_22_17 21992 23191 + 3.A.1.1.22
CAZyme HRGMv2_1578_22 HRGMv2_1578_22_18 23648 25915 - GT35
CAZyme HRGMv2_1578_22 HRGMv2_1578_22_19 26044 27549 - GH77
Gene ID: HRGMv2_1578_22_11
Type: TC
Location: 15125 - 17575 (-)
Gene ID: HRGMv2_1578_22_12
Type:
Location: 17597 - 17716 (+)
Gene ID: HRGMv2_1578_22_13
Type: TF
Location: 17800 - 18519 (+)
Gene ID: HRGMv2_1578_22_14
Type: TC
Location: 18826 - 20142 (+)
Gene ID: HRGMv2_1578_22_15
Type: TC
Location: 20230 - 21084 (+)
Gene ID: HRGMv2_1578_22_16
Type: TC
Location: 21084 - 21923 (+)
Gene ID: HRGMv2_1578_22_17
Type: TC
Location: 21992 - 23191 (+)
Gene ID: HRGMv2_1578_22_18
Type: CAZyme
Location: 23648 - 25915 (-)
Gene ID: HRGMv2_1578_22_19
Type: CAZyme
Location: 26044 - 27549 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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