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Cluster: HRGMv2_1578_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1578_12 HRGMv2_1578_12_41 47046 49385 - 3.A.3.5.15
STP HRGMv2_1578_12 HRGMv2_1578_12_42 49719 51803 - Pkinase
STP HRGMv2_1578_12 HRGMv2_1578_12_43 51974 52936 - FHA
TC HRGMv2_1578_12 HRGMv2_1578_12_44 53537 55795 + 1.I.1.1.3
STP HRGMv2_1578_12 HRGMv2_1578_12_45 56417 57178 + Fer4
TC HRGMv2_1578_12 HRGMv2_1578_12_46 57522 58034 + 4.A.1.2.5
pfam HRGMv2_1578_12 HRGMv2_1578_12_47 58041 58907 + PRD | PRD | CAT_RBD
TC HRGMv2_1578_12 HRGMv2_1578_12_48 59007 60623 + 4.A.1.1.3
CAZyme HRGMv2_1578_12 HRGMv2_1578_12_49 60627 62009 + GH4
Gene ID: HRGMv2_1578_12_41
Type: TC
Location: 47046 - 49385 (-)
Gene ID: HRGMv2_1578_12_42
Type: STP
Location: 49719 - 51803 (-)
Gene ID: HRGMv2_1578_12_43
Type: STP
Location: 51974 - 52936 (-)
Gene ID: HRGMv2_1578_12_44
Type: TC
Location: 53537 - 55795 (+)
Gene ID: HRGMv2_1578_12_45
Type: STP
Location: 56417 - 57178 (+)
Gene ID: HRGMv2_1578_12_46
Type: TC
Location: 57522 - 58034 (+)
Gene ID: HRGMv2_1578_12_47
Type: pfam
Location: 58041 - 58907 (+)
Gene ID: HRGMv2_1578_12_48
Type: TC
Location: 59007 - 60623 (+)
Gene ID: HRGMv2_1578_12_49
Type: CAZyme
Location: 60627 - 62009 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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