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Cluster: HRGMv2_1578_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1578_6 HRGMv2_1578_6_49 49873 51297 - 9.B.67.3.6
CAZyme HRGMv2_1578_6 HRGMv2_1578_6_50 51297 52403 - GT4
pfam HRGMv2_1578_6 HRGMv2_1578_6_51 52403 53587 - Epimerase_2
pfam HRGMv2_1578_6 HRGMv2_1578_6_52 53592 54809 - Epimerase | Polysacc_synt_C
TC HRGMv2_1578_6 HRGMv2_1578_6_53 54811 55869 - 9.B.18.2.1
CAZyme HRGMv2_1578_6 HRGMv2_1578_6_54 55862 57082 - GT4
TC HRGMv2_1578_6 HRGMv2_1578_6_55 57082 57870 - 9.B.18.1.3
Gene ID: HRGMv2_1578_6_49
Type: TC
Location: 49873 - 51297 (-)
Gene ID: HRGMv2_1578_6_50
Type: CAZyme
Location: 51297 - 52403 (-)
Gene ID: HRGMv2_1578_6_51
Type: pfam
Location: 52403 - 53587 (-)
Gene ID: HRGMv2_1578_6_52
Type: pfam
Location: 53592 - 54809 (-)
Gene ID: HRGMv2_1578_6_53
Type: TC
Location: 54811 - 55869 (-)
Gene ID: HRGMv2_1578_6_54
Type: CAZyme
Location: 55862 - 57082 (-)
Gene ID: HRGMv2_1578_6_55
Type: TC
Location: 57082 - 57870 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1578_6_52 vegetarian > omnivore 1.53831 0.02194
HRGMv2_1578_6_52 vegetarian > vegan 2.04428 0.01165

🧭 Explore Read Mapping of CGC

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