Cluster: HRGMv2_1577_CGC14
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_1577
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1577_8 | HRGMv2_1577_8_69 | 75225 | 76466 | + | GT111 |
| CAZyme | HRGMv2_1577_8 | HRGMv2_1577_8_70 | 76542 | 78941 | + | GT2 | GT2 |
| pfam | HRGMv2_1577_8 | HRGMv2_1577_8_71 | 79018 | 81201 | - | DUF7654 | DUF7657 |
| pfam | HRGMv2_1577_8 | HRGMv2_1577_8_72 | 81228 | 81584 | - | DUF2304 |
| CAZyme | HRGMv2_1577_8 | HRGMv2_1577_8_73 | 81584 | 82294 | - | GT2 |
| CAZyme | HRGMv2_1577_8 | HRGMv2_1577_8_74 | 82321 | 83562 | - | GT4 |
| pfam | HRGMv2_1577_8 | HRGMv2_1577_8_75 | 83562 | 84737 | - | Epimerase_2 |
| CAZyme | HRGMv2_1577_8 | HRGMv2_1577_8_76 | 84759 | 85823 | - | GT4 |
| pfam | HRGMv2_1577_8 | HRGMv2_1577_8_77 | 85883 | 87100 | - | Epimerase | Polysacc_synt_C |
| TC | HRGMv2_1577_8 | HRGMv2_1577_8_78 | 87102 | 88157 | - | 9.B.18.2.1 |
Gene ID: HRGMv2_1577_8_69
Type: CAZyme
Location: 75225 - 76466 (+)
Type: CAZyme
Location: 75225 - 76466 (+)
Gene ID: HRGMv2_1577_8_70
Type: CAZyme
Location: 76542 - 78941 (+)
Type: CAZyme
Location: 76542 - 78941 (+)
Gene ID: HRGMv2_1577_8_71
Type: pfam
Location: 79018 - 81201 (-)
Type: pfam
Location: 79018 - 81201 (-)
Gene ID: HRGMv2_1577_8_72
Type: pfam
Location: 81228 - 81584 (-)
Type: pfam
Location: 81228 - 81584 (-)
Gene ID: HRGMv2_1577_8_73
Type: CAZyme
Location: 81584 - 82294 (-)
Type: CAZyme
Location: 81584 - 82294 (-)
Gene ID: HRGMv2_1577_8_74
Type: CAZyme
Location: 82321 - 83562 (-)
Type: CAZyme
Location: 82321 - 83562 (-)
Gene ID: HRGMv2_1577_8_75
Type: pfam
Location: 83562 - 84737 (-)
Type: pfam
Location: 83562 - 84737 (-)
Gene ID: HRGMv2_1577_8_76
Type: CAZyme
Location: 84759 - 85823 (-)
Type: CAZyme
Location: 84759 - 85823 (-)
Gene ID: HRGMv2_1577_8_77
Type: pfam
Location: 85883 - 87100 (-)
Type: pfam
Location: 85883 - 87100 (-)
Gene ID: HRGMv2_1577_8_78
Type: TC
Location: 87102 - 88157 (-)
Type: TC
Location: 87102 - 88157 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1577_8_69 | vegan > omnivore | 1.31103 | 0.01882 |
| HRGMv2_1577_8_69 | vegetarian > omnivore | 2.06057 | 0.02258 |
| HRGMv2_1577_8_70 | vegan > omnivore | 2.52943 | 0.01882 |
| HRGMv2_1577_8_70 | vegetarian > omnivore | 3.29638 | 0.02258 |
| HRGMv2_1577_8_72 | vegan > omnivore | 1.28320 | 0.01882 |
| HRGMv2_1577_8_72 | vegetarian > omnivore | 1.72633 | 0.02258 |
| HRGMv2_1577_8_73 | vegan > omnivore | 1.76980 | 0.01882 |
| HRGMv2_1577_8_73 | vegetarian > omnivore | 2.91762 | 0.02258 |
| HRGMv2_1577_8_73 | vegetarian > vegan | 1.14782 | 0.02258 |
| HRGMv2_1577_8_74 | vegan > omnivore | 1.02833 | 0.01882 |
| HRGMv2_1577_8_74 | vegetarian > omnivore | 1.10285 | 0.02258 |
| HRGMv2_1577_8_77 | vegetarian > omnivore | 1.28146 | 0.02258 |