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Cluster: HRGMv2_1575_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1575_7 HRGMv2_1575_7_10 8403 8846 + 4.A.6.1.16
pfam HRGMv2_1575_7 HRGMv2_1575_7_11 8846 9127 + YajC
TC HRGMv2_1575_7 HRGMv2_1575_7_12 9164 9646 + 4.A.6.1.4
TC HRGMv2_1575_7 HRGMv2_1575_7_13 9737 10537 + 4.A.6.1.4
TC HRGMv2_1575_7 HRGMv2_1575_7_14 10527 11609 + 4.A.6.1.4
TF HRGMv2_1575_7 HRGMv2_1575_7_15 11795 12526 + GntR
STP HRGMv2_1575_7 HRGMv2_1575_7_16 12641 13807 + SIS | SIS
CAZyme HRGMv2_1575_7 HRGMv2_1575_7_17 13925 15094 + CE9
Gene ID: HRGMv2_1575_7_10
Type: TC
Location: 8403 - 8846 (+)
Gene ID: HRGMv2_1575_7_11
Type: pfam
Location: 8846 - 9127 (+)
Gene ID: HRGMv2_1575_7_12
Type: TC
Location: 9164 - 9646 (+)
Gene ID: HRGMv2_1575_7_13
Type: TC
Location: 9737 - 10537 (+)
Gene ID: HRGMv2_1575_7_14
Type: TC
Location: 10527 - 11609 (+)
Gene ID: HRGMv2_1575_7_15
Type: TF
Location: 11795 - 12526 (+)
Gene ID: HRGMv2_1575_7_16
Type: STP
Location: 12641 - 13807 (+)
Gene ID: HRGMv2_1575_7_17
Type: CAZyme
Location: 13925 - 15094 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1575_7_11 vegan > omnivore 1.01733 0.00701

🧭 Explore Read Mapping of CGC

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