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Cluster: HRGMv2_1575_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1575_41 HRGMv2_1575_41_3 2073 2840 - 1.A.23.4.10
pfam HRGMv2_1575_41 HRGMv2_1575_41_4 2969 4357 - 5_nucleotid_C
TC HRGMv2_1575_41 HRGMv2_1575_41_5 4430 5224 - 3.A.1.34.1
TC HRGMv2_1575_41 HRGMv2_1575_41_6 5217 6140 - 3.A.1.34.1
TC HRGMv2_1575_41 HRGMv2_1575_41_7 6345 7325 - 3.A.1.34.1
NULL(UNKNOWN) HRGMv2_1575_41 HRGMv2_1575_41_8 7486 8274 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1575_41 HRGMv2_1575_41_9 8524 9927 - tRNA-synt_2 | tRNA_anti-codon
TC HRGMv2_1575_41 HRGMv2_1575_41_10 10109 10672 - 4.A.1.2.6
peptidase HRGMv2_1575_41 HRGMv2_1575_41_11 10920 11822 + S09.UPW
TC HRGMv2_1575_41 HRGMv2_1575_41_12 12222 14582 + 9.A.8.1.6
TC HRGMv2_1575_41 HRGMv2_1575_41_13 14707 15903 + 2.A.1.2.18
CAZyme HRGMv2_1575_41 HRGMv2_1575_41_14 16032 16763 + GH13_20
Gene ID: HRGMv2_1575_41_3
Type: TC
Location: 2073 - 2840 (-)
Gene ID: HRGMv2_1575_41_4
Type: pfam
Location: 2969 - 4357 (-)
Gene ID: HRGMv2_1575_41_5
Type: TC
Location: 4430 - 5224 (-)
Gene ID: HRGMv2_1575_41_6
Type: TC
Location: 5217 - 6140 (-)
Gene ID: HRGMv2_1575_41_7
Type: TC
Location: 6345 - 7325 (-)
Gene ID: HRGMv2_1575_41_8
Type:
Location: 7486 - 8274 (-)
Gene ID: HRGMv2_1575_41_9
Type: pfam
Location: 8524 - 9927 (-)
Gene ID: HRGMv2_1575_41_10
Type: TC
Location: 10109 - 10672 (-)
Gene ID: HRGMv2_1575_41_11
Type: peptidase
Location: 10920 - 11822 (+)
Gene ID: HRGMv2_1575_41_12
Type: TC
Location: 12222 - 14582 (+)
Gene ID: HRGMv2_1575_41_13
Type: TC
Location: 14707 - 15903 (+)
Gene ID: HRGMv2_1575_41_14
Type: CAZyme
Location: 16032 - 16763 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1575_41_4 vegan > omnivore 1.86022 0.00701
HRGMv2_1575_41_4 vegetarian > omnivore 1.45414 0.01054

🧭 Explore Read Mapping of CGC

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