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Cluster: HRGMv2_1575_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1575_36 HRGMv2_1575_36_3 2559 3497 + 3.A.1.105.7
pfam HRGMv2_1575_36 HRGMv2_1575_36_4 3507 4694 + ABC2_membrane_3
pfam HRGMv2_1575_36 HRGMv2_1575_36_5 4681 5886 + ABC2_membrane | ABC2_membrane_3
TC HRGMv2_1575_36 HRGMv2_1575_36_6 5968 6693 + 3.A.1.134.3
pfam HRGMv2_1575_36 HRGMv2_1575_36_7 6702 9368 + FtsX | FtsX
STP HRGMv2_1575_36 HRGMv2_1575_36_8 9587 10792 + Fer4
TC HRGMv2_1575_36 HRGMv2_1575_36_9 11274 12536 - 2.A.55.3.6
STP HRGMv2_1575_36 HRGMv2_1575_36_10 12545 14389 - CBS | CBS
CAZyme HRGMv2_1575_36 HRGMv2_1575_36_11 14718 16124 - CE4
Gene ID: HRGMv2_1575_36_3
Type: TC
Location: 2559 - 3497 (+)
Gene ID: HRGMv2_1575_36_4
Type: pfam
Location: 3507 - 4694 (+)
Gene ID: HRGMv2_1575_36_5
Type: pfam
Location: 4681 - 5886 (+)
Gene ID: HRGMv2_1575_36_6
Type: TC
Location: 5968 - 6693 (+)
Gene ID: HRGMv2_1575_36_7
Type: pfam
Location: 6702 - 9368 (+)
Gene ID: HRGMv2_1575_36_8
Type: STP
Location: 9587 - 10792 (+)
Gene ID: HRGMv2_1575_36_9
Type: TC
Location: 11274 - 12536 (-)
Gene ID: HRGMv2_1575_36_10
Type: STP
Location: 12545 - 14389 (-)
Gene ID: HRGMv2_1575_36_11
Type: CAZyme
Location: 14718 - 16124 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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