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Cluster: HRGMv2_1574_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1574_9 HRGMv2_1574_9_34 40598 41767 - CE9
STP HRGMv2_1574_9 HRGMv2_1574_9_35 41886 43052 - SIS | SIS
TF HRGMv2_1574_9 HRGMv2_1574_9_36 43167 43898 - GntR
TC HRGMv2_1574_9 HRGMv2_1574_9_37 44084 45166 - 4.A.6.1.4
TC HRGMv2_1574_9 HRGMv2_1574_9_38 45156 45956 - 4.A.6.1.4
TC HRGMv2_1574_9 HRGMv2_1574_9_39 46047 46529 - 4.A.6.1.4
pfam HRGMv2_1574_9 HRGMv2_1574_9_40 46566 46847 - YajC
TC HRGMv2_1574_9 HRGMv2_1574_9_41 46847 47290 - 4.A.6.1.16
Gene ID: HRGMv2_1574_9_34
Type: CAZyme
Location: 40598 - 41767 (-)
Gene ID: HRGMv2_1574_9_35
Type: STP
Location: 41886 - 43052 (-)
Gene ID: HRGMv2_1574_9_36
Type: TF
Location: 43167 - 43898 (-)
Gene ID: HRGMv2_1574_9_37
Type: TC
Location: 44084 - 45166 (-)
Gene ID: HRGMv2_1574_9_38
Type: TC
Location: 45156 - 45956 (-)
Gene ID: HRGMv2_1574_9_39
Type: TC
Location: 46047 - 46529 (-)
Gene ID: HRGMv2_1574_9_40
Type: pfam
Location: 46566 - 46847 (-)
Gene ID: HRGMv2_1574_9_41
Type: TC
Location: 46847 - 47290 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1574_9_40 vegan > omnivore 1.00735 0.00863

🧭 Explore Read Mapping of CGC

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