dbCAN Logo

Cluster: HRGMv2_1574_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1574_9 HRGMv2_1574_9_12 13570 13908 - 4.A.3.1.2
TF HRGMv2_1574_9 HRGMv2_1574_9_13 14123 15127 - LacI
TC HRGMv2_1574_9 HRGMv2_1574_9_14 15485 17260 + 4.A.3.1.1
CAZyme HRGMv2_1574_9 HRGMv2_1574_9_15 17327 18766 + GH1
TF HRGMv2_1574_9 HRGMv2_1574_9_16 19034 20071 - LacI
CAZyme HRGMv2_1574_9 HRGMv2_1574_9_17 20413 21855 + GH1
TC HRGMv2_1574_9 HRGMv2_1574_9_18 22032 23792 + 4.A.3.1.1
TF HRGMv2_1574_9 HRGMv2_1574_9_19 24045 25055 - LacI
TC HRGMv2_1574_9 HRGMv2_1574_9_20 25332 27110 + 4.A.3.1.1
CAZyme HRGMv2_1574_9 HRGMv2_1574_9_21 27186 28607 + GH1
Gene ID: HRGMv2_1574_9_12
Type: TC
Location: 13570 - 13908 (-)
Gene ID: HRGMv2_1574_9_13
Type: TF
Location: 14123 - 15127 (-)
Gene ID: HRGMv2_1574_9_14
Type: TC
Location: 15485 - 17260 (+)
Gene ID: HRGMv2_1574_9_15
Type: CAZyme
Location: 17327 - 18766 (+)
Gene ID: HRGMv2_1574_9_16
Type: TF
Location: 19034 - 20071 (-)
Gene ID: HRGMv2_1574_9_17
Type: CAZyme
Location: 20413 - 21855 (+)
Gene ID: HRGMv2_1574_9_18
Type: TC
Location: 22032 - 23792 (+)
Gene ID: HRGMv2_1574_9_19
Type: TF
Location: 24045 - 25055 (-)
Gene ID: HRGMv2_1574_9_20
Type: TC
Location: 25332 - 27110 (+)
Gene ID: HRGMv2_1574_9_21
Type: CAZyme
Location: 27186 - 28607 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1574_9_16 vegetarian > omnivore 1.02586 0.02677

🧭 Explore Read Mapping of CGC

← Back to Cluster List