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Cluster: HRGMv2_1573_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1573_17 HRGMv2_1573_17_12 9016 10185 - CE9
STP HRGMv2_1573_17 HRGMv2_1573_17_13 10303 11469 - SIS | SIS
TF HRGMv2_1573_17 HRGMv2_1573_17_14 11584 12315 - GntR
TC HRGMv2_1573_17 HRGMv2_1573_17_15 12500 13582 - 4.A.6.1.4
TC HRGMv2_1573_17 HRGMv2_1573_17_16 13572 14372 - 4.A.6.1.4
TC HRGMv2_1573_17 HRGMv2_1573_17_17 14462 14944 - 4.A.6.1.4
pfam HRGMv2_1573_17 HRGMv2_1573_17_18 14981 15262 - YajC
TC HRGMv2_1573_17 HRGMv2_1573_17_19 15262 15705 - 4.A.6.1.16
Gene ID: HRGMv2_1573_17_12
Type: CAZyme
Location: 9016 - 10185 (-)
Gene ID: HRGMv2_1573_17_13
Type: STP
Location: 10303 - 11469 (-)
Gene ID: HRGMv2_1573_17_14
Type: TF
Location: 11584 - 12315 (-)
Gene ID: HRGMv2_1573_17_15
Type: TC
Location: 12500 - 13582 (-)
Gene ID: HRGMv2_1573_17_16
Type: TC
Location: 13572 - 14372 (-)
Gene ID: HRGMv2_1573_17_17
Type: TC
Location: 14462 - 14944 (-)
Gene ID: HRGMv2_1573_17_18
Type: pfam
Location: 14981 - 15262 (-)
Gene ID: HRGMv2_1573_17_19
Type: TC
Location: 15262 - 15705 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1573_17_18 vegan > omnivore 1.04823 0.00863

🧭 Explore Read Mapping of CGC

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