Cluster: HRGMv2_1572_CGC9
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1572
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1572_37 | HRGMv2_1572_37_2 | 433 | 2304 | + | 3.A.1.135.5 |
| TC | HRGMv2_1572_37 | HRGMv2_1572_37_3 | 2305 | 4164 | + | 3.A.1.135.5 |
| pfam | HRGMv2_1572_37 | HRGMv2_1572_37_4 | 4276 | 4824 | + | Flavodoxin_3 |
| TF | HRGMv2_1572_37 | HRGMv2_1572_37_5 | 4971 | 5711 | - | GntR |
| CAZyme | HRGMv2_1572_37 | HRGMv2_1572_37_6 | 5899 | 7230 | + | GH4 |
| TC | HRGMv2_1572_37 | HRGMv2_1572_37_7 | 7287 | 8750 | + | 4.A.1.2.6 |
Gene ID: HRGMv2_1572_37_2
Type: TC
Location: 433 - 2304 (+)
Type: TC
Location: 433 - 2304 (+)
Gene ID: HRGMv2_1572_37_3
Type: TC
Location: 2305 - 4164 (+)
Type: TC
Location: 2305 - 4164 (+)
Gene ID: HRGMv2_1572_37_4
Type: pfam
Location: 4276 - 4824 (+)
Type: pfam
Location: 4276 - 4824 (+)
Gene ID: HRGMv2_1572_37_5
Type: TF
Location: 4971 - 5711 (-)
Type: TF
Location: 4971 - 5711 (-)
Gene ID: HRGMv2_1572_37_6
Type: CAZyme
Location: 5899 - 7230 (+)
Type: CAZyme
Location: 5899 - 7230 (+)
Gene ID: HRGMv2_1572_37_7
Type: TC
Location: 7287 - 8750 (+)
Type: TC
Location: 7287 - 8750 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AR
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.