Cluster: HRGMv2_1572_CGC8
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1572
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1572_34 | HRGMv2_1572_34_5 | 3629 | 10042 | - | GH31_18 |
| TF | HRGMv2_1572_34 | HRGMv2_1572_34_6 | 10557 | 10997 | - | MarR |
| NULL(UNKNOWN) | HRGMv2_1572_34 | HRGMv2_1572_34_7 | 11102 | 11428 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1572_34 | HRGMv2_1572_34_8 | 11624 | 12451 | - | 4.A.6.1.6 |
| TC | HRGMv2_1572_34 | HRGMv2_1572_34_9 | 12451 | 13308 | - | 4.A.6.1.1 |
Gene ID: HRGMv2_1572_34_5
Type: CAZyme
Location: 3629 - 10042 (-)
Type: CAZyme
Location: 3629 - 10042 (-)
Gene ID: HRGMv2_1572_34_6
Type: TF
Location: 10557 - 10997 (-)
Type: TF
Location: 10557 - 10997 (-)
Gene ID: HRGMv2_1572_34_7
Type:
Location: 11102 - 11428 (-)
Type:
Location: 11102 - 11428 (-)
Gene ID: HRGMv2_1572_34_8
Type: TC
Location: 11624 - 12451 (-)
Type: TC
Location: 11624 - 12451 (-)
Gene ID: HRGMv2_1572_34_9
Type: TC
Location: 12451 - 13308 (-)
Type: TC
Location: 12451 - 13308 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AR
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1572_34_5 | vegetarian > vegan | 2.17440 | 0.01195 |