Cluster: HRGMv2_1572_CGC7
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1572
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1572_20 | HRGMv2_1572_20_7 | 5727 | 7160 | - | GH1 |
| CAZyme | HRGMv2_1572_20 | HRGMv2_1572_20_8 | 7227 | 8690 | - | GH1 |
| TC | HRGMv2_1572_20 | HRGMv2_1572_20_9 | 8788 | 10098 | - | 4.A.3.2.9 |
| TC | HRGMv2_1572_20 | HRGMv2_1572_20_10 | 10195 | 10503 | - | 4.A.3.2.2 |
Gene ID: HRGMv2_1572_20_7
Type: CAZyme
Location: 5727 - 7160 (-)
Type: CAZyme
Location: 5727 - 7160 (-)
Gene ID: HRGMv2_1572_20_8
Type: CAZyme
Location: 7227 - 8690 (-)
Type: CAZyme
Location: 7227 - 8690 (-)
Gene ID: HRGMv2_1572_20_9
Type: TC
Location: 8788 - 10098 (-)
Type: TC
Location: 8788 - 10098 (-)
Gene ID: HRGMv2_1572_20_10
Type: TC
Location: 10195 - 10503 (-)
Type: TC
Location: 10195 - 10503 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AR
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.