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Cluster: HRGMv2_1572_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1572_18 HRGMv2_1572_18_2 317 2659 - 3.A.3.5.15
TC HRGMv2_1572_18 HRGMv2_1572_18_3 3221 5470 + 1.I.1.1.3
TC HRGMv2_1572_18 HRGMv2_1572_18_4 5947 6459 + 4.A.1.2.5
pfam HRGMv2_1572_18 HRGMv2_1572_18_5 6466 7332 + PRD | PRD | CAT_RBD
TC HRGMv2_1572_18 HRGMv2_1572_18_6 7432 9048 + 4.A.1.1.3
CAZyme HRGMv2_1572_18 HRGMv2_1572_18_7 9052 10434 + GH4
STP HRGMv2_1572_18 HRGMv2_1572_18_8 10691 12523 + Pyr_redox_2
TC HRGMv2_1572_18 HRGMv2_1572_18_9 12517 14328 + 3.D.1.5.1
NULL(UNKNOWN) HRGMv2_1572_18 HRGMv2_1572_18_10 14331 15389 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1572_18 HRGMv2_1572_18_11 15393 16760 + 3.A.1.17.10
Gene ID: HRGMv2_1572_18_2
Type: TC
Location: 317 - 2659 (-)
Gene ID: HRGMv2_1572_18_3
Type: TC
Location: 3221 - 5470 (+)
Gene ID: HRGMv2_1572_18_4
Type: TC
Location: 5947 - 6459 (+)
Gene ID: HRGMv2_1572_18_5
Type: pfam
Location: 6466 - 7332 (+)
Gene ID: HRGMv2_1572_18_6
Type: TC
Location: 7432 - 9048 (+)
Gene ID: HRGMv2_1572_18_7
Type: CAZyme
Location: 9052 - 10434 (+)
Gene ID: HRGMv2_1572_18_8
Type: STP
Location: 10691 - 12523 (+)
Gene ID: HRGMv2_1572_18_9
Type: TC
Location: 12517 - 14328 (+)
Gene ID: HRGMv2_1572_18_10
Type:
Location: 14331 - 15389 (+)
Gene ID: HRGMv2_1572_18_11
Type: TC
Location: 15393 - 16760 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1572_18_11 vegan > omnivore 1.04768 0.01287

🧭 Explore Read Mapping of CGC

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