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Cluster: HRGMv2_1572_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1572_9 HRGMv2_1572_9_8 11002 13452 - 4.A.1.1.8
NULL(UNKNOWN) HRGMv2_1572_9 HRGMv2_1572_9_9 13474 13593 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_1572_9 HRGMv2_1572_9_10 13677 14396 + GntR
TC HRGMv2_1572_9 HRGMv2_1572_9_11 14703 16019 + 3.A.1.1.45
TC HRGMv2_1572_9 HRGMv2_1572_9_12 16107 16961 + 3.A.1.1.45
TC HRGMv2_1572_9 HRGMv2_1572_9_13 16961 17800 + 3.A.1.1.45
TC HRGMv2_1572_9 HRGMv2_1572_9_14 17869 19068 + 3.A.1.1.22
CAZyme HRGMv2_1572_9 HRGMv2_1572_9_15 19525 21792 - GT35
CAZyme HRGMv2_1572_9 HRGMv2_1572_9_16 21922 23427 - GH77
Gene ID: HRGMv2_1572_9_8
Type: TC
Location: 11002 - 13452 (-)
Gene ID: HRGMv2_1572_9_9
Type:
Location: 13474 - 13593 (+)
Gene ID: HRGMv2_1572_9_10
Type: TF
Location: 13677 - 14396 (+)
Gene ID: HRGMv2_1572_9_11
Type: TC
Location: 14703 - 16019 (+)
Gene ID: HRGMv2_1572_9_12
Type: TC
Location: 16107 - 16961 (+)
Gene ID: HRGMv2_1572_9_13
Type: TC
Location: 16961 - 17800 (+)
Gene ID: HRGMv2_1572_9_14
Type: TC
Location: 17869 - 19068 (+)
Gene ID: HRGMv2_1572_9_15
Type: CAZyme
Location: 19525 - 21792 (-)
Gene ID: HRGMv2_1572_9_16
Type: CAZyme
Location: 21922 - 23427 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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