Cluster: HRGMv2_1572_CGC4
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1572
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1572_5 | HRGMv2_1572_5_23 | 20397 | 21512 | - | GT28 |
| TC | HRGMv2_1572_5 | HRGMv2_1572_5_24 | 21502 | 22995 | - | 2.A.103.1.1 |
| pfam | HRGMv2_1572_5 | HRGMv2_1572_5_25 | 23032 | 24438 | - | Mur_ligase_C | Mur_ligase_M |
| TC | HRGMv2_1572_5 | HRGMv2_1572_5_26 | 24448 | 25467 | - | 9.B.146.1.6 |
Gene ID: HRGMv2_1572_5_23
Type: CAZyme
Location: 20397 - 21512 (-)
Type: CAZyme
Location: 20397 - 21512 (-)
Gene ID: HRGMv2_1572_5_24
Type: TC
Location: 21502 - 22995 (-)
Type: TC
Location: 21502 - 22995 (-)
Gene ID: HRGMv2_1572_5_25
Type: pfam
Location: 23032 - 24438 (-)
Type: pfam
Location: 23032 - 24438 (-)
Gene ID: HRGMv2_1572_5_26
Type: TC
Location: 24448 - 25467 (-)
Type: TC
Location: 24448 - 25467 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AR
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.