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Cluster: HRGMv2_1572_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1572_4 HRGMv2_1572_4_17 17428 18354 - CE7
TC HRGMv2_1572_4 HRGMv2_1572_4_18 18486 19313 - 3.A.1.5.27
TC HRGMv2_1572_4 HRGMv2_1572_4_19 19314 21329 - 3.A.1.5.25
TC HRGMv2_1572_4 HRGMv2_1572_4_20 21333 22289 - 3.A.1.5.38
TC HRGMv2_1572_4 HRGMv2_1572_4_21 22447 24060 - 3.A.1.5.27
pfam HRGMv2_1572_4 HRGMv2_1572_4_22 24426 26366 - GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_1572_4 HRGMv2_1572_4_23 26373 28055 - 2.A.66.4.4
Gene ID: HRGMv2_1572_4_17
Type: CAZyme
Location: 17428 - 18354 (-)
Gene ID: HRGMv2_1572_4_18
Type: TC
Location: 18486 - 19313 (-)
Gene ID: HRGMv2_1572_4_19
Type: TC
Location: 19314 - 21329 (-)
Gene ID: HRGMv2_1572_4_20
Type: TC
Location: 21333 - 22289 (-)
Gene ID: HRGMv2_1572_4_21
Type: TC
Location: 22447 - 24060 (-)
Gene ID: HRGMv2_1572_4_22
Type: pfam
Location: 24426 - 26366 (-)
Gene ID: HRGMv2_1572_4_23
Type: TC
Location: 26373 - 28055 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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