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Cluster: HRGMv2_1572_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1572_2 HRGMv2_1572_2_14 17504 19063 + 2.A.2.5.1
CAZyme HRGMv2_1572_2 HRGMv2_1572_2_15 19178 20773 + GH28
CAZyme HRGMv2_1572_2 HRGMv2_1572_2_16 20905 23070 + CE19 | CE8
pfam HRGMv2_1572_2 HRGMv2_1572_2_17 23140 23808 + Lipase_GDSL | Lipase_GDSL_2
CAZyme HRGMv2_1572_2 HRGMv2_1572_2_18 23916 25154 + GH105
Gene ID: HRGMv2_1572_2_14
Type: TC
Location: 17504 - 19063 (+)
Gene ID: HRGMv2_1572_2_15
Type: CAZyme
Location: 19178 - 20773 (+)
Gene ID: HRGMv2_1572_2_16
Type: CAZyme
Location: 20905 - 23070 (+)
Gene ID: HRGMv2_1572_2_17
Type: pfam
Location: 23140 - 23808 (+)
Gene ID: HRGMv2_1572_2_18
Type: CAZyme
Location: 23916 - 25154 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1572_2_18 vegan > omnivore 1.02008 0.01287

🧭 Explore Read Mapping of CGC

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