Cluster: HRGMv2_1572_CGC18
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1572
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1572_98 | HRGMv2_1572_98_1 | 3 | 1397 | - | GH1 |
| TC | HRGMv2_1572_98 | HRGMv2_1572_98_2 | 1464 | 3239 | - | 4.A.3.1.1 |
| TF | HRGMv2_1572_98 | HRGMv2_1572_98_3 | 3567 | 4601 | + | LacI |
| TC | HRGMv2_1572_98 | HRGMv2_1572_98_4 | 4816 | 5154 | + | 4.A.3.1.2 |
Gene ID: HRGMv2_1572_98_1
Type: CAZyme
Location: 3 - 1397 (-)
Type: CAZyme
Location: 3 - 1397 (-)
Gene ID: HRGMv2_1572_98_2
Type: TC
Location: 1464 - 3239 (-)
Type: TC
Location: 1464 - 3239 (-)
Gene ID: HRGMv2_1572_98_3
Type: TF
Location: 3567 - 4601 (+)
Type: TF
Location: 3567 - 4601 (+)
Gene ID: HRGMv2_1572_98_4
Type: TC
Location: 4816 - 5154 (+)
Type: TC
Location: 4816 - 5154 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AR
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.