Cluster: HRGMv2_1572_CGC17
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1572
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1572_93 | HRGMv2_1572_93_2 | 1023 | 2147 | - | GH172 |
| pfam | HRGMv2_1572_93 | HRGMv2_1572_93_3 | 2160 | 2558 | - | EIIA-man |
| TC | HRGMv2_1572_93 | HRGMv2_1572_93_4 | 2585 | 3418 | - | 4.A.6.1.13 |
| TC | HRGMv2_1572_93 | HRGMv2_1572_93_5 | 3421 | 4206 | - | 4.A.6.1.13 |
| TC | HRGMv2_1572_93 | HRGMv2_1572_93_6 | 4216 | 4689 | - | 4.A.6.1.18 |
Gene ID: HRGMv2_1572_93_2
Type: CAZyme
Location: 1023 - 2147 (-)
Type: CAZyme
Location: 1023 - 2147 (-)
Gene ID: HRGMv2_1572_93_3
Type: pfam
Location: 2160 - 2558 (-)
Type: pfam
Location: 2160 - 2558 (-)
Gene ID: HRGMv2_1572_93_4
Type: TC
Location: 2585 - 3418 (-)
Type: TC
Location: 2585 - 3418 (-)
Gene ID: HRGMv2_1572_93_5
Type: TC
Location: 3421 - 4206 (-)
Type: TC
Location: 3421 - 4206 (-)
Gene ID: HRGMv2_1572_93_6
Type: TC
Location: 4216 - 4689 (-)
Type: TC
Location: 4216 - 4689 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AR
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1572_93_6 | vegan > omnivore | 1.05441 | 0.01287 |