Cluster: HRGMv2_1572_CGC15
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1572
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1572_78 | HRGMv2_1572_78_1 | 112 | 648 | - | 4.A.1.2.6 |
| CAZyme | HRGMv2_1572_78 | HRGMv2_1572_78_2 | 788 | 2227 | - | GH1 |
| TF | HRGMv2_1572_78 | HRGMv2_1572_78_3 | 2398 | 3390 | - | 0035607 |
| CAZyme | HRGMv2_1572_78 | HRGMv2_1572_78_4 | 3505 | 6096 | + | GH106 |
Gene ID: HRGMv2_1572_78_1
Type: TC
Location: 112 - 648 (-)
Type: TC
Location: 112 - 648 (-)
Gene ID: HRGMv2_1572_78_2
Type: CAZyme
Location: 788 - 2227 (-)
Type: CAZyme
Location: 788 - 2227 (-)
Gene ID: HRGMv2_1572_78_3
Type: TF
Location: 2398 - 3390 (-)
Type: TF
Location: 2398 - 3390 (-)
Gene ID: HRGMv2_1572_78_4
Type: CAZyme
Location: 3505 - 6096 (+)
Type: CAZyme
Location: 3505 - 6096 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AR
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.