Cluster: HRGMv2_1572_CGC13
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1572
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1572_67 | HRGMv2_1572_67_3 | 1759 | 3084 | + | GH4 |
| TC | HRGMv2_1572_67 | HRGMv2_1572_67_4 | 3167 | 4729 | + | 4.A.1.1.3 |
| TC | HRGMv2_1572_67 | HRGMv2_1572_67_5 | 4958 | 6193 | - | 2.A.1.2.25 |
Gene ID: HRGMv2_1572_67_3
Type: CAZyme
Location: 1759 - 3084 (+)
Type: CAZyme
Location: 1759 - 3084 (+)
Gene ID: HRGMv2_1572_67_4
Type: TC
Location: 3167 - 4729 (+)
Type: TC
Location: 3167 - 4729 (+)
Gene ID: HRGMv2_1572_67_5
Type: TC
Location: 4958 - 6193 (-)
Type: TC
Location: 4958 - 6193 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AR
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.