Cluster: HRGMv2_1572_CGC11
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1572
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1572_43 | HRGMv2_1572_43_4 | 2468 | 3868 | + | GH1 |
| TC | HRGMv2_1572_43 | HRGMv2_1572_43_5 | 3989 | 5341 | + | 4.A.3.2.2 |
| TC | HRGMv2_1572_43 | HRGMv2_1572_43_6 | 5495 | 5797 | + | 4.A.3.2.9 |
| TC | HRGMv2_1572_43 | HRGMv2_1572_43_7 | 5807 | 6139 | + | 4.A.3.2.3 |
| STP | HRGMv2_1572_43 | HRGMv2_1572_43_8 | 6381 | 7334 | + | Glucokinase |
| pfam | HRGMv2_1572_43 | HRGMv2_1572_43_9 | 7482 | 8405 | + | DHH | DHHA2 |
| TC | HRGMv2_1572_43 | HRGMv2_1572_43_10 | 8673 | 10031 | + | 2.A.33.1.1 |
Gene ID: HRGMv2_1572_43_4
Type: CAZyme
Location: 2468 - 3868 (+)
Type: CAZyme
Location: 2468 - 3868 (+)
Gene ID: HRGMv2_1572_43_5
Type: TC
Location: 3989 - 5341 (+)
Type: TC
Location: 3989 - 5341 (+)
Gene ID: HRGMv2_1572_43_6
Type: TC
Location: 5495 - 5797 (+)
Type: TC
Location: 5495 - 5797 (+)
Gene ID: HRGMv2_1572_43_7
Type: TC
Location: 5807 - 6139 (+)
Type: TC
Location: 5807 - 6139 (+)
Gene ID: HRGMv2_1572_43_8
Type: STP
Location: 6381 - 7334 (+)
Type: STP
Location: 6381 - 7334 (+)
Gene ID: HRGMv2_1572_43_9
Type: pfam
Location: 7482 - 8405 (+)
Type: pfam
Location: 7482 - 8405 (+)
Gene ID: HRGMv2_1572_43_10
Type: TC
Location: 8673 - 10031 (+)
Type: TC
Location: 8673 - 10031 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AR
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1572_43_6 | vegan > omnivore | 1.04048 | 0.01287 |