Cluster: HRGMv2_1572_CGC1
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1572
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1572_2 | HRGMv2_1572_2_2 | 1749 | 4757 | + | GH2 |
| NULL(UNKNOWN) | HRGMv2_1572_2 | HRGMv2_1572_2_3 | 4761 | 5216 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1572_2 | HRGMv2_1572_2_4 | 5370 | 6833 | + | 2.A.3.7.4 |
| STP | HRGMv2_1572_2 | HRGMv2_1572_2_5 | 7255 | 7503 | + | PTS-HPr |
| STP | HRGMv2_1572_2 | HRGMv2_1572_2_6 | 7694 | 7936 | + | FeoA |
| TC | HRGMv2_1572_2 | HRGMv2_1572_2_7 | 7976 | 8197 | + | 9.A.8.1.6 |
| TC | HRGMv2_1572_2 | HRGMv2_1572_2_8 | 8321 | 10648 | + | 9.A.8.1.6 |
Gene ID: HRGMv2_1572_2_2
Type: CAZyme
Location: 1749 - 4757 (+)
Type: CAZyme
Location: 1749 - 4757 (+)
Gene ID: HRGMv2_1572_2_3
Type:
Location: 4761 - 5216 (+)
Type:
Location: 4761 - 5216 (+)
Gene ID: HRGMv2_1572_2_4
Type: TC
Location: 5370 - 6833 (+)
Type: TC
Location: 5370 - 6833 (+)
Gene ID: HRGMv2_1572_2_5
Type: STP
Location: 7255 - 7503 (+)
Type: STP
Location: 7255 - 7503 (+)
Gene ID: HRGMv2_1572_2_6
Type: STP
Location: 7694 - 7936 (+)
Type: STP
Location: 7694 - 7936 (+)
Gene ID: HRGMv2_1572_2_7
Type: TC
Location: 7976 - 8197 (+)
Type: TC
Location: 7976 - 8197 (+)
Gene ID: HRGMv2_1572_2_8
Type: TC
Location: 8321 - 10648 (+)
Type: TC
Location: 8321 - 10648 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AR
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.