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Cluster: HRGMv2_1571_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1571_4 HRGMv2_1571_4_20 21556 22725 - CE9
STP HRGMv2_1571_4 HRGMv2_1571_4_21 22843 24009 - SIS | SIS
TF HRGMv2_1571_4 HRGMv2_1571_4_22 24124 24855 - GntR
TC HRGMv2_1571_4 HRGMv2_1571_4_23 25041 26123 - 4.A.6.1.4
TC HRGMv2_1571_4 HRGMv2_1571_4_24 26113 26913 - 4.A.6.1.4
TC HRGMv2_1571_4 HRGMv2_1571_4_25 27004 27486 - 4.A.6.1.4
pfam HRGMv2_1571_4 HRGMv2_1571_4_26 27523 27804 - YajC
TC HRGMv2_1571_4 HRGMv2_1571_4_27 27804 28247 - 4.A.6.1.16
Gene ID: HRGMv2_1571_4_20
Type: CAZyme
Location: 21556 - 22725 (-)
Gene ID: HRGMv2_1571_4_21
Type: STP
Location: 22843 - 24009 (-)
Gene ID: HRGMv2_1571_4_22
Type: TF
Location: 24124 - 24855 (-)
Gene ID: HRGMv2_1571_4_23
Type: TC
Location: 25041 - 26123 (-)
Gene ID: HRGMv2_1571_4_24
Type: TC
Location: 26113 - 26913 (-)
Gene ID: HRGMv2_1571_4_25
Type: TC
Location: 27004 - 27486 (-)
Gene ID: HRGMv2_1571_4_26
Type: pfam
Location: 27523 - 27804 (-)
Gene ID: HRGMv2_1571_4_27
Type: TC
Location: 27804 - 28247 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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