Cluster: HRGMv2_1571_CGC7
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1571
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1571_4 | HRGMv2_1571_4_1 | 32 | 1792 | + | 4.A.3.1.1 |
| TF | HRGMv2_1571_4 | HRGMv2_1571_4_2 | 2206 | 3216 | - | LacI |
| TC | HRGMv2_1571_4 | HRGMv2_1571_4_3 | 3492 | 5276 | + | 4.A.3.1.1 |
| CAZyme | HRGMv2_1571_4 | HRGMv2_1571_4_4 | 5353 | 6774 | + | GH1 |
| NULL(UNKNOWN) | HRGMv2_1571_4 | HRGMv2_1571_4_5 | 7073 | 7339 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_1571_4 | HRGMv2_1571_4_6 | 7329 | 7634 | + | ParE_toxin |
| TC | HRGMv2_1571_4 | HRGMv2_1571_4_7 | 7994 | 9688 | - | 4.A.3.1.1 |
Gene ID: HRGMv2_1571_4_1
Type: TC
Location: 32 - 1792 (+)
Type: TC
Location: 32 - 1792 (+)
Gene ID: HRGMv2_1571_4_2
Type: TF
Location: 2206 - 3216 (-)
Type: TF
Location: 2206 - 3216 (-)
Gene ID: HRGMv2_1571_4_3
Type: TC
Location: 3492 - 5276 (+)
Type: TC
Location: 3492 - 5276 (+)
Gene ID: HRGMv2_1571_4_4
Type: CAZyme
Location: 5353 - 6774 (+)
Type: CAZyme
Location: 5353 - 6774 (+)
Gene ID: HRGMv2_1571_4_5
Type:
Location: 7073 - 7339 (+)
Type:
Location: 7073 - 7339 (+)
Gene ID: HRGMv2_1571_4_6
Type: pfam
Location: 7329 - 7634 (+)
Type: pfam
Location: 7329 - 7634 (+)
Gene ID: HRGMv2_1571_4_7
Type: TC
Location: 7994 - 9688 (-)
Type: TC
Location: 7994 - 9688 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AA
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.